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Commit 18565743 authored by Mikaël Salson's avatar Mikaël Salson
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consensus-random-read-choose.should: Update comments (default is not the same anymore)

parent a564ff7a
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                    algo/tests/should-get-tests/consensus-random-read-chooser.should
                    View file @ 18565743
                    !LAUNCH: $VIDJIL_DIR/$EXEC -w 20 -g $VIDJIL_DIR/germline/homo-sapiens.g:TRG -consensus-on-longest-sequences $VIDJIL_DATA/test-random-consensus.fa.gz > consensus-default.log
                    !LAUNCH: $VIDJIL_DIR/$EXEC -w 20 -g $VIDJIL_DIR/germline/homo-sapiens.g:TRG --consensus-on-longest-sequences $VIDJIL_DATA/test-random-consensus.fa.gz > consensus-longest.log
                    !LAUNCH: $VIDJIL_DIR/$EXEC -w 20 -g $VIDJIL_DIR/germline/homo-sapiens.g:TRG $VIDJIL_DATA/test-random-consensus.fa.gz > consensus-random.log
                    !NO_LAUNCHER:
                    !LAUNCH: diff consensus-default.log consensus-random.log
                    !LAUNCH: diff consensus-longest.log consensus-random.log
                    !EXIT_CODE: 1
                    $ Output should differ: default has a consensus of 52bp (with the spurious insertion)
                    $ Output should differ: ReadQualityScore gives a consensus of 52bp (with the spurious insertion)
                    # Appears twice in the header of the consensus sequence and in the similarity matrix
                    2:^< .* 52 bp
                    1:^< CTTTT
                    ......
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