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vidjil
vidjil
Commits
18565743
Commit
18565743
authored
May 16, 2019
by
Mikaël Salson
Browse files
consensus-random-read-choose.should: Update comments (default is not the same anymore)
parent
a564ff7a
Pipeline
#78587
passed with stages
in 37 minutes and 10 seconds
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algo/tests/should-get-tests/consensus-random-read-chooser.should
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18565743
!LAUNCH: $VIDJIL_DIR/$EXEC -w 20 -g $VIDJIL_DIR/germline/homo-sapiens.g:TRG -consensus-on-longest-sequences $VIDJIL_DATA/test-random-consensus.fa.gz > consensus-
defaul
t.log
!LAUNCH: $VIDJIL_DIR/$EXEC -w 20 -g $VIDJIL_DIR/germline/homo-sapiens.g:TRG
-
-consensus-on-longest-sequences $VIDJIL_DATA/test-random-consensus.fa.gz > consensus-
longes
t.log
!LAUNCH: $VIDJIL_DIR/$EXEC -w 20 -g $VIDJIL_DIR/germline/homo-sapiens.g:TRG $VIDJIL_DATA/test-random-consensus.fa.gz > consensus-random.log
!NO_LAUNCHER:
!LAUNCH: diff consensus-
defaul
t.log consensus-random.log
!LAUNCH: diff consensus-
longes
t.log consensus-random.log
!EXIT_CODE: 1
$ Output should differ:
default ha
s a consensus of 52bp (with the spurious insertion)
$ Output should differ:
ReadQualityScore give
s a consensus of 52bp (with the spurious insertion)
# Appears twice in the header of the consensus sequence and in the similarity matrix
2:^< .* 52 bp
1:^< CTTTT
...
...
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