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Commit 183c58da authored by Mathieu Giraud's avatar Mathieu Giraud

tests: testing examples embedded in 'vidjil -h'

Closes #2634.
parent 56290579
!LAUNCH: (cd $VIDJIL_DIR ; ./vidjil -h 2> out/vidjil-h.txt ; grep 'vidjil -c' out/vidjil-h.txt > out/vidjil-h.sh ; sh out/vidjil-h.sh)
# Test examples embedded in './vidjil -h'
# Run 6 times (-h + 5 examples)
6:Vidjil -- V.D.J recombinations analysis
# '-c clone', two times
2: end of clones
# '-c windows'
1:Extracting windows
# '-c segment'
1:Segmenting V.D.J
# '-c germlines'
1:Discovering germlines
1:max.*kmer
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