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vidjil
vidjil
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148863b0
Commit
148863b0
authored
Oct 17, 2018
by
Ryan Herbert
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doc/server.md add information for adding software
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@@ -263,6 +263,16 @@ in your `docker-compose.yml`: `../germline:/usr/share/vidjil/germline`.
After retrieving the germlines, you will also need to copy the generated
`germline.js`
(found in
`browser/js/`
) into the
`docker/vidjil-client/conf`
directory.
# Docker -- Adding Software
Some software can be added to Vidjil for pre-processing or even processing if the
software outputs data compatible with the .vidjil format.
We recommend you add software by adding a volume to your
`docker-compose.yml`
.
By default we add our external files to
`/opt/vidjil`
on the host machine. You can then
reference the executable in
`vidjil-server/conf/defs.py`
.
In some cases, using the software may require development. In other cases, adding
the appropriate
`pre process`
or
`analysis config`
can be enough.
# Docker -- Troubleshooting
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