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@@ -496,10 +496,10 @@ The main output of Vidjil-algo (with the default `-c clones` command) are two fo
the detailed V(D)J and CDR3 designation (`-z`, see warning below), and possibly
the results of the further clustering.
The web application takes this `.vidjil` file ([possibly merged with `fuse.py`](#fuse_py)) for the *visualization and analysis* of clones and their
The web application takes this `.vidjil` file ([possibly merged with `fuse.py`](#following-clones-in-several-samples)) for the *visualization and analysis* of clones and their
tracking along different samples (for example time points in a MRD
setup or in a immunological study).
Please see [browser](browser.org).org for more information on the web application.
Please see the [br](browser.org).org for more information on the web application.
- The `.vdj.fa` file is *a FASTA file for further processing by other bioinformatics tools*.
The sequences are at least the windows (and their count in the headers) or
