diff --git a/doc/vidjil-algo.md b/doc/vidjil-algo.md index d7e2872286c6bbb8de07a97c395254d0e4359dab..6ef2581eff06a19040140467e6f157721d3bfe25 100644 --- a/doc/vidjil-algo.md +++ b/doc/vidjil-algo.md @@ -496,10 +496,10 @@ The main output of Vidjil-algo (with the default `-c clones` command) are two fo the detailed V(D)J and CDR3 designation (`-z`, see warning below), and possibly the results of the further clustering. - The web application takes this `.vidjil` file ([possibly merged with `fuse.py`](#fuse_py)) for the *visualization and analysis* of clones and their + The web application takes this `.vidjil` file ([possibly merged with `fuse.py`](#following-clones-in-several-samples)) for the *visualization and analysis* of clones and their tracking along different samples (for example time points in a MRD setup or in a immunological study). - Please see [browser](browser.org).org for more information on the web application. + Please see the [br](browser.org).org for more information on the web application. - The `.vdj.fa` file is *a FASTA file for further processing by other bioinformatics tools*. The sequences are at least the windows (and their count in the headers) or