Commit 132c251c authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

tests: simplify test

Follows 88c6e924.
The test is still failing.
parent 72bf8505
...@@ -18,11 +18,10 @@ file2=$(mktemp); \ ...@@ -18,11 +18,10 @@ file2=$(mktemp); \
done;\ done;\
cat $VIDJIL_DIR/data/buggy-D.fa) > \\$file2; \ cat $VIDJIL_DIR/data/buggy-D.fa) > \\$file2; \
$VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -d -r 1 -w 60 -z 100 -G $VIDJIL_DIR/germline/IGH \\$file2;\ $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -d -r 1 -w 60 -z 100 -G $VIDJIL_DIR/germline/IGH \\$file2;\
$VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -d -r 1 -w 60 -z 100 -G $VIDJIL_DIR/germline/IGH $VIDJIL_DIR/data/buggy-D.fa) | \ $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -d -r 1 -w 60 -z 100 -G $VIDJIL_DIR/germline/IGH $VIDJIL_DIR/data/buggy-D.fa)
sort | uniq -c
$ Three times the same window $ Three times the same window
1: 3 TGTGCGGGATCTTCGTCCTCTTATCATAATAATGGTTTTTTGGCGGGGGAGTCATGGGGC 3: TGTGCGGGATCTTCGTCCTCTTATCATAATAATGGTTTTTTGGCGGGGGAGTCATGGGGC
$ Three times the same segmentation $ Three times the same segmentation
1: 3 IGHV4-34.*IGHD.*IGHJ4 3: IGHV4-34.*IGHD.*IGHJ4
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