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vidjil
vidjil
Commits
132c251c
Commit
132c251c
authored
Jan 13, 2017
by
Mathieu Giraud
Browse files
tests: simplify test
Follows
88c6e924
. The test is still failing.
parent
72bf8505
Changes
1
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Inline
Side-by-side
algo/tests/should-get-tests/segmentation-D-read-number.should-get
View file @
132c251c
...
...
@@ -18,11 +18,10 @@ file2=$(mktemp); \
done;\
cat $VIDJIL_DIR/data/buggy-D.fa) > \\$file2; \
$VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -d -r 1 -w 60 -z 100 -G $VIDJIL_DIR/germline/IGH \\$file2;\
$VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -d -r 1 -w 60 -z 100 -G $VIDJIL_DIR/germline/IGH $VIDJIL_DIR/data/buggy-D.fa) | \
sort | uniq -c
$VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -d -r 1 -w 60 -z 100 -G $VIDJIL_DIR/germline/IGH $VIDJIL_DIR/data/buggy-D.fa)
$ Three times the same window
1:
3 TGTGCGGGATCTTCGTCCTCTTATCATAATAATGGTTTTTTGGCGGGGGAGTCATGGGGC
3
:
TGTGCGGGATCTTCGTCCTCTTATCATAATAATGGTTTTTTGGCGGGGGAGTCATGGGGC
$ Three times the same segmentation
1:
3 IGHV4-34.*IGHD.*IGHJ4
3
:
IGHV4-34.*IGHD.*IGHJ4
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