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Commit 107b8cb6 authored by Mikaël Salson's avatar Mikaël Salson
Browse files

Doc: Export .vidjil .analysis examples

The examples are exported so that they can be properly tested afterwards.
parent 2305cfc5
......@@ -2,3 +2,6 @@
%.html: %.org
# Requires emacs with org-mode
emacs -batch $^ -f "org-html-export-to-html"
analysis-example%: format-analysis.org
emacs -batch $^ -f "org-babel-tangle"
......@@ -24,7 +24,7 @@ This is a minimal =.vidjil= file, describing clones in one sample.
The segmentation is here =TRGV5*01 5/CC/0 TRGJ1*02=.
Note that other elements could be added by some program (such as =tag= or =clusters=).
#+BEGIN_SRC js
#+BEGIN_SRC js :tangle analysis-example1.vidjil
{
"producer": "program xyz version xyz",
"timestamp": "2014-10-01 12:00:11",
......@@ -69,7 +69,7 @@ It is the responsability of the program generating the initial =.vidjil= files t
do a correct gathering ('windows' is used by Vidjil, 'clone sequence' is used by EC-NGS/Brno pipeline,
and 'IMGT clonotype (AA) or (nt)' could also be used by some programs).
#+BEGIN_SRC js
#+BEGIN_SRC js :tangle analysis-example2.vidjil
{
"producer": "program xyz version xyz / fuse.py version xyz",
"timestamp": "2014-10-01 14:00:11",
......@@ -112,7 +112,7 @@ This file reflects what an user could have done with the browser (or with some o
She has manually set sample names (=names=), tagged (=tag=, =tags=) and clustered (=clusters=)
some clones, and added external data (=data=).
#+BEGIN_SRC js
#+BEGIN_SRC js :tangle analysis-example1.analysis
{
"producer": "user Bob, via browser",
"timestamp": "2014-10-01 12:00:11",
......
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