Commit 10547fe6 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

Merge branch 'feature-a/correct-output-messages' into 'dev'

Feature a/correct output messages

See merge request !664
parents b211c487 ecb92708
Pipeline #139076 passed with stages
in 8 minutes and 33 seconds
...@@ -3,11 +3,16 @@ ...@@ -3,11 +3,16 @@
$ There are three clones in the .vidjil $ There are three clones in the .vidjil
3:"id" 3:"id"
$ Correct output message
1:Vidjil web application
!LAUNCH: $VIDJIL_DIR/$EXEC --no-vidjil -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta ; cat out/Stanford_S22.vidjil !LAUNCH: $VIDJIL_DIR/$EXEC --no-vidjil -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta ; cat out/Stanford_S22.vidjil
$ There are no clones in the .vidjil $ There are no clones in the .vidjil
0:"id" 0:"id"
$ Correct output message
1:only metadata
!LAUNCH: rm out/Stanford_S22.tsv ; $LAUNCHER $VIDJIL_DIR/$EXEC $EXTRA -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv !LAUNCH: rm out/Stanford_S22.tsv ; $LAUNCHER $VIDJIL_DIR/$EXEC $EXTRA -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv
......
...@@ -1747,7 +1747,7 @@ int main (int argc, char **argv) ...@@ -1747,7 +1747,7 @@ int main (int argc, char **argv)
//$ Output .vidjil json //$ Output .vidjil json
cout << " ==> " << f_json ; cout << " ==> " << f_json ;
if (no_vidjil) if (!no_vidjil)
{ {
cout << "\t(data file for the Vidjil web application)" << endl; cout << "\t(data file for the Vidjil web application)" << endl;
} }
......
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