Mise à jour terminée. Pour connaître les apports de la version 13.8.4 par rapport à notre ancienne version vous pouvez lire les "Release Notes" suivantes :
https://about.gitlab.com/releases/2021/02/11/security-release-gitlab-13-8-4-released/
https://about.gitlab.com/releases/2021/02/05/gitlab-13-8-3-released/

Commit 0fa4d88b authored by Mathieu Giraud's avatar Mathieu Giraud

Merge branch 'feature-c/4632-analyse-avec-mixcr-et-distributions' into 'dev'

Resolve "Analyse avec MiXCR ne fonctionne pas avec les distributions"

Closes #4632

See merge request !882
parents 03757218 d9e68a92
Pipeline #219196 passed with stages
in 41 minutes and 38 seconds
......@@ -3284,11 +3284,15 @@ changeAlleleNotation: function(alleleNotation, update, save) {
var timename = this.samples.original_names[0]
var distribs = this.distributions.repertoires[timename]
// Create the list of all available distributions (on the first timepoint, but should be similar for each)
for (var i = 0; i < distribs.length; i++) {
var distrib = distribs[i]
raw_distribs_axes.push( distrib.axes )
if (distribs != undefined){
for (var i = 0; i < distribs.length; i++) {
var distrib = distribs[i]
raw_distribs_axes.push( distrib.axes )
}
console.log("Their are " + raw_distribs_axes.length + " distribs to load")
} else {
console.log("Their are no distribs to load")
}
console.log("Their are " + raw_distribs_axes.length + " distribs to load")
var same_distribs;
var current_distrib;
......
{
"germlines": {},
"producer": "vidjil fuse",
"similarity": [],
"timestamp": "2020-09-18 09:37:26",
"vidjil_json_version": "2016b",
"reads": {
"segmented": [
550709,
149614
],
"total": [
566483,
151007
],
"germline": {
"unexpected": [
0,
0
],
"TRD+": [
317,
901
],
"TRA": [
5,
2
],
"TRB": [
1,
0
],
"IGH": [
64,
8
],
"TRD": [
65,
17
],
"TRG": [
326,
141256
],
"IGK+": [
612,
1975
],
"TRB+": [
0,
0
],
"IGL": [
0,
0
],
"IGK": [
812,
2853
],
"IGH+": [
548489,
2592
],
"TRA+D": [
18,
10
]
}
},
"samples": {
"log": [
"log1",
"log2"
],
"producer": [
"vidjil-algo 2020.06",
"vidjil-algo 2020.06"
],
"timestamp": [
"2020-09-18 09:08:26",
"2020-09-18 09:18:37"
],
"commandline": [
"cmd 1 ",
"cmd 2 "
],
"number": 2,
"original_names": [
"file1",
"file2"
],
"run_timestamp": [
"2020-09-17 09:39:41",
"2020-09-17 09:59:41"
]
},
"clones": [
{
"germline": "IGH+",
"id": "TGTGGTATTATGATTACGTTTGGTGTTGAGACTACTGGGGCCAGGGAACC",
"reads": [
19047,
42
],
"top": 1,
"name": "IGHD3-16*01 18/TGTTGA/8 IGHJ4*02"
}
],
"clusters": [],
"distributions": {
"keys": [
"clones",
"reads"
],
"repertoires": {},
"categories": {},
"filters": {}
}
}
# coding: utf-8
load 'vidjil_browser.rb'
load 'browser_test.rb'
#browser test suite
class TestGraph < BrowserTest
def setup
super
if not defined? $b
set_browser("/browser/test/data/issues/4632.vidjil")
end
end
def after_tests
end
### Issue 4632; issue with empty distributions field (case in mixcr)
def test_00_correct_load
assert ( $b.clone_in_list('0').exists?), ">> real clone exist in list"
end
# Not really a test
def test_zz_close
close_everything
end
end
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