Commit 0f908c9f authored by Mathieu Giraud's avatar Mathieu Giraud

tests: testing 100k sequences instead of 10k uncovers here the Ds bug

parent 1fd45e6a
!LAUNCH: (for i in {1..10000}; do echo '>read' ; echo ccgtgtattactgtgcgagagagctgaatacttccagcactg ; done ;) > same-igh-10k.fa ; $LAUNCHER ../../vidjil -G ../../germline/IGH -r 5000 -w 15 same-igh-10k.fa; rm -f same-igh-10k.fa
!LAUNCH: (for i in {1..100000}; do echo '>read' ; echo ccgtgtattactgtgcgagagagctgaatacttccagcactg ; done ;) > same-igh-100k.fa ; $LAUNCHER ../../vidjil -G ../../germline/IGH -r 5000 -w 15 same-igh-100k.fa; rm -f same-igh-100k.fa
$ Find a unique clone with all reads
1:>clone-001--IGH--0010000--100.--window
1:>clone-001--IGH--0100000--100.--window
$ Find a representative
1:>clone-001--IGH--0010000--100.--read-.0,41.
1:>clone-001--IGH--0100000--100.--read-.0,41.
$ Compute the diversity. No diversity here.
1: 1 0.000
......
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