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vidjil
vidjil
Commits
0f908c9f
Commit
0f908c9f
authored
Feb 22, 2016
by
Mathieu Giraud
Browse files
tests: testing 100k sequences instead of 10k uncovers here the Ds bug
parent
1fd45e6a
Changes
1
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algo/tests/large-r.should_get
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0f908c9f
!LAUNCH: (for i in {1..10000}; do echo '>read' ; echo ccgtgtattactgtgcgagagagctgaatacttccagcactg ; done ;) > same-igh-10k.fa ; $LAUNCHER ../../vidjil -G ../../germline/IGH -r 5000 -w 15 same-igh-10k.fa; rm -f same-igh-10k.fa
!LAUNCH: (for i in {1..10000
0
}; do echo '>read' ; echo ccgtgtattactgtgcgagagagctgaatacttccagcactg ; done ;) > same-igh-10
0
k.fa ; $LAUNCHER ../../vidjil -G ../../germline/IGH -r 5000 -w 15 same-igh-10
0
k.fa; rm -f same-igh-10
0
k.fa
$ Find a unique clone with all reads
1:>clone-001--IGH--0
0
10000--100.--window
1:>clone-001--IGH--01
0
0000--100.--window
$ Find a representative
1:>clone-001--IGH--0
0
10000--100.--read-.0,41.
1:>clone-001--IGH--01
0
0000--100.--read-.0,41.
$ Compute the diversity. No diversity here.
1: 1 0.000
...
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