Commit 0ea45b40 authored by florian.thonier's avatar florian.thonier Committed by Mathieu Giraud

tests: update nck-TRD+-VDDJ sequences

parent 32ceb85b
######################################
# VDDJ
>TRDV1 2/7/2 TRDD2 0/3/0 TRDD3 3/6/0 TRDJ1 [TRD+]
>TRDV1*01 2/TCTCGAT/2 TRDD2*01 0/CGT/0 TRDD3*01 3/CTCGGG/0 TRDJ1*01 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAATCTCGATTTCCTACCGTACTGGGGGATCTCGGGACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
>TRDV1 2/0/0 TRDD2 0/1/2 TRDD3 0/11/4 TRDJ1 [TRD]
>TRDV1*01 1//1 TRDD2*01 0/G/2 TRDD3*01 0/AGGGTTGGGAT/4 TRDJ1*01 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACCTTCCTACGTGGGGGATACGAGGGTtgGGATCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
# /0 TRDD1 4/ -> 8-0-4 = 4nt, very short
>TRDV1 1/0/0 TRDD1 4/5/2 TRDD3 1/5/0 TRDJ1 [TRD] TODO
# Is such a recombination with Dd3 then Dd2 possible ?
>TRDV1*01 1/GAAAAGGAA/2 TRDD3*01 1//2 TRDD2*01 0//2 TRDJ1*01 [TRD] TODO
nnnCAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACGAAAAGGAATGGGGGATACTTCCTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACnn
# /1 TRDD1 3/ -> 8-1-3 = 5nt, short
>TRDV1 0/0/1 TRDD1 3/9/2 TRDD3 1/6/10 TRDJ1 [TRD] TODO
# A short Dd1 with 4nt "AAAT" could also be inserted just after the TRDV1
>TRDV1*01 0/AAATTTCGTGATT/2 TRDD3*01 1/CTTGGG/10 TRDJ1*01 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTAAATTTCGTGATTTGGGGGATACCTTGGGACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
# /0 TRDD1 4/ -> 8-0-4 = 4nt, very short
>TRDV1 10/8/1 TRDD1 3/3/2 TRDD2 1/21/27 TRDJ1 [TRD] TODO
# A short Dd1 could also be inserted after the TRDV1
>TRDV1*01 10/CTCCCGCAAAATTCA/2 TRDD2*01 0/TGCC/5 TRDD3*01 3/GCACTTTTCCTT/27 TRDJ1*01 [TRD]
nnCAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCCTCCCGCAAAATTCATTCCTACTGCCGGGATGCACTTTTCCTTGAACCCGTGTGACTGTGGAACANNNNNN
>TRDV1 4/4/0 TRDD2 2/0/1 TRDD3 1/5/0 TRDJ1 [TRD]
>TRDV1*01 1/C/0 TRDD2*01 2//1 TRDD3*01 1/AGGGT/0 TRDJ1*01 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGCaCCCCTTCCTCTGGGGGATACAGGGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
>TRDV1 2/4/4 TRDD2 0/5/0 TRDD3 5/9/0 TRDJ1 [TRD]
# only 2 nt (TRDV1), bug ? TRDD2 have 5nt (CCTAC) that are not seen
>TRDV1*01 2/ATGG/4 TRDD2*01 0/AGGA/0 TRDD3*01 5/TCCCTTTGT/0 TRDJ1*01 [TRD] TODO
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAAATGGCCTACAGGAACTGGGGGTCCCTTTGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
######################################
# VDDDJ
>TRDV1 0/1/1 TRDD1 2/0/0 TRDD2 5/15/2 TRDD3 6/0/4 TRDJ1 [TRD] TODO
>TRDV1*01 0/T/1 TRDD1*01 2/CCTTAGGGATGGTCGAGGA/2 TRDD3*01 6//4 TRDJ1*01 [TRD]
ACAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTTAAATACCTTAGGGATGGTCGAGGATGGGGCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
>TRDV1 1/0/2 TRDD1 3/8/1 TRDD2 3/12/0 TRDD3 2/0/9 TRDJ1 [TRD] TODO
>TRDV1*01 1/AATCACCTCTT/1 TRDD2*01 3/CCACGAAAACAT/0 TRDD3*01 2//9 TRDJ1*01 [TRD]
CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACAATCACCTCTTCTTCCCCACGAAAACATACTGGGGGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment