tests: update nck-TRD+-VDDJ sequences

algo/tests/should-vdj-tests/0000-nck-TRD+-VDDJ.should-vdj.fa

 
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-# VDDJ
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->TRDV1 2/7/2 TRDD2 0/3/0 TRDD3 3/6/0 TRDJ1  [TRD+]
+>TRDV1*01 2/TCTCGAT/2 TRDD2*01 0/CGT/0 TRDD3*01 3/CTCGGG/0 TRDJ1*01  [TRD]
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAATCTCGATTTCCTACCGTACTGGGGGATCTCGGGACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
->TRDV1 2/0/0  TRDD2 0/1/2 TRDD3 0/11/4 TRDJ1 [TRD]
+>TRDV1*01 1//1 TRDD2*01 0/G/2 TRDD3*01 0/AGGGTTGGGAT/4 TRDJ1*01 [TRD]
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACCTTCCTACGTGGGGGATACGAGGGTtgGGATCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
-# /0 TRDD1 4/ -> 8-0-4 = 4nt, very short
->TRDV1 1/0/0 TRDD1 4/5/2 TRDD3 1/5/0 TRDJ1 [TRD] TODO
+# Is such a recombination with Dd3 then Dd2 possible ?
+>TRDV1*01 1/GAAAAGGAA/2 TRDD3*01 1//2 TRDD2*01 0//2 TRDJ1*01 [TRD] TODO
 nnnCAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACGAAAAGGAATGGGGGATACTTCCTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACnn
 
-# /1 TRDD1 3/ -> 8-1-3 = 5nt, short
->TRDV1 0/0/1 TRDD1 3/9/2 TRDD3 1/6/10 TRDJ1 [TRD] TODO
+# A short Dd1 with 4nt "AAAT" could also be inserted just after the TRDV1
+>TRDV1*01 0/AAATTTCGTGATT/2 TRDD3*01 1/CTTGGG/10 TRDJ1*01 [TRD]
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTAAATTTCGTGATTTGGGGGATACCTTGGGACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
-# /0 TRDD1 4/ -> 8-0-4 = 4nt, very short
->TRDV1 10/8/1 TRDD1 3/3/2 TRDD2 1/21/27 TRDJ1 [TRD] TODO
+# A short Dd1 could also be inserted after the TRDV1
+>TRDV1*01 10/CTCCCGCAAAATTCA/2 TRDD2*01 0/TGCC/5 TRDD3*01 3/GCACTTTTCCTT/27 TRDJ1*01 [TRD]
 nnCAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCCTCCCGCAAAATTCATTCCTACTGCCGGGATGCACTTTTCCTTGAACCCGTGTGACTGTGGAACANNNNNN
 
->TRDV1 4/4/0 TRDD2 2/0/1 TRDD3 1/5/0 TRDJ1 [TRD]
+>TRDV1*01 1/C/0 TRDD2*01 2//1 TRDD3*01 1/AGGGT/0 TRDJ1*01  [TRD]
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGCaCCCCTTCCTCTGGGGGATACAGGGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
->TRDV1 2/4/4 TRDD2 0/5/0 TRDD3 5/9/0 TRDJ1 [TRD]
+# only 2 nt (TRDV1), bug ? TRDD2 have 5nt (CCTAC) that are not seen
+>TRDV1*01 2/ATGG/4 TRDD2*01 0/AGGA/0 TRDD3*01 5/TCCCTTTGT/0 TRDJ1*01 [TRD] TODO
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAAATGGCCTACAGGAACTGGGGGTCCCTTTGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
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-# VDDDJ
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->TRDV1 0/1/1 TRDD1 2/0/0 TRDD2 5/15/2 TRDD3 6/0/4 TRDJ1 [TRD] TODO
+>TRDV1*01 0/T/1 TRDD1*01 2/CCTTAGGGATGGTCGAGGA/2 TRDD3*01 6//4 TRDJ1*01 [TRD]
 ACAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTTAAATACCTTAGGGATGGTCGAGGATGGGGCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
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->TRDV1 1/0/2 TRDD1 3/8/1 TRDD2 3/12/0 TRDD3 2/0/9 TRDJ1 [TRD] TODO
+>TRDV1*01 1/AATCACCTCTT/1 TRDD2*01 3/CCACGAAAACAT/0 TRDD3*01 2//9 TRDJ1*01 [TRD]
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACAATCACCTCTTCTTCCCCACGAAAACATACTGGGGGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
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