Commit 0b97541f authored by Ryan Herbert's avatar Ryan Herbert

doc/dev.org correct some code blocks

parent 84a58b6a
......@@ -691,12 +691,14 @@ make functional
obtained from sequence_file, fused_file, results_file and analysis_file
with the following query:
$ SELECT <filename field>
#+BEGIN_SRC sql
SELECT <filename field>
FROM <table name>
INTO OUTFILE 'filepath'
FIELDS TERMINATED BY ','
ENCLOSED BY ''
LINES TERMINATED BY '\n'
#+END_SRC
Note: We are managing filenames here which should not contain any
character such as quotes or commas so we can afford to refrain from
......@@ -705,4 +707,6 @@ make functional
This query will output a csv file containing a filename on each line.
Copying the files is now just a matter of running the following script:
$ sh copy_files <file source> <file destination> <input file>
#+BEGIN_SRC sh
sh copy_files <file source> <file destination> <input file>
#+END_SRC
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