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vidjil
vidjil
Commits
071b5b24
Commit
071b5b24
authored
Nov 05, 2014
by
Mikaël Salson
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Tests: test KmerAffect
parent
6ac0cfa3
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3 changed files
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+177
-0
algo/tests/testKmerAffect.cpp
algo/tests/testKmerAffect.cpp
+143
-0
algo/tests/tests.cpp
algo/tests/tests.cpp
+2
-0
algo/tests/tests.h
algo/tests/tests.h
+32
-0
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algo/tests/testKmerAffect.cpp
0 → 100644
View file @
071b5b24
#include "tests.h"
#include <core/kmeraffect.h>
void
testAffect
()
{
affect_t
Vminus
=
{
'V'
},
Vplus
=
{
'V'
};
Vplus
.
c
|=
1
<<
7
;
affect_t
Jplus
=
{
'J'
};
Jplus
.
c
|=
1
<<
7
;
TAP_TEST
(
affect_strand
(
Vminus
)
==
-
1
,
TEST_AFFECT_STRAND
,
""
);
TAP_TEST
(
affect_strand
(
Vplus
)
==
1
,
TEST_AFFECT_STRAND
,
""
);
TAP_TEST
(
affect_char
(
Vminus
)
==
'V'
,
TEST_AFFECT_CHAR
,
""
);
TAP_TEST
(
affect_char
(
Vplus
)
==
'V'
,
TEST_AFFECT_CHAR
,
""
);
TAP_TEST
(
affect_char
(
Jplus
)
==
'J'
,
TEST_AFFECT_CHAR
,
""
);
TAP_TEST
(
!
(
Vminus
==
Vplus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
!=
Vplus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<
Vplus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>
Vplus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<=
Vplus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>=
Vplus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
==
Jplus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
!=
Jplus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<=
Jplus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>=
Jplus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<
Jplus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>
Jplus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
==
Vminus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
!=
Vminus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<
Vminus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
>
Vminus
),
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
<=
Vminus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>=
Vminus
,
TEST_AFFECT_COMPARISON
,
""
);
TAP_TEST
(
toString
(
Vminus
)
==
"-V"
,
TEST_AFFECT_TO_STRING
,
toString
(
Vminus
));
TAP_TEST
(
toString
(
Vplus
)
==
"+V"
,
TEST_AFFECT_TO_STRING
,
toString
(
Vplus
));
TAP_TEST
(
toString
(
Jplus
)
==
"+J"
,
TEST_AFFECT_TO_STRING
,
toString
(
Jplus
));
TAP_TEST
(
toString
(
AFFECT_UNKNOWN
.
affect
)
==
" _"
,
TEST_AFFECT_TO_STRING
,
""
);
TAP_TEST
(
toString
(
AFFECT_AMBIGUOUS
.
affect
)
==
" ?"
,
TEST_AFFECT_TO_STRING
,
""
);
ostringstream
oss
;
oss
<<
Vminus
;
TAP_TEST
(
toString
(
Vminus
)
==
oss
.
str
(),
TEST_AFFECT_OUT
,
""
);
ostringstream
oss2
;
oss2
<<
Vplus
;
TAP_TEST
(
toString
(
Vplus
)
==
oss2
.
str
(),
TEST_AFFECT_OUT
,
""
);
ostringstream
oss3
;
oss3
<<
Jplus
;
TAP_TEST
(
toString
(
Jplus
)
==
oss3
.
str
(),
TEST_AFFECT_OUT
,
""
);
}
void
testKmerAffectClass
()
{
affect_t
Vminus
=
{
'V'
},
Vplus
=
{
'V'
};
Vplus
.
c
|=
1
<<
7
;
affect_t
Jplus
=
{
'J'
};
Jplus
.
c
|=
1
<<
7
;
KmerAffect
KAVp
(
"V"
,
1
);
KmerAffect
KAVm
(
"V"
,
-
1
);
KmerAffect
KAJp
(
"J"
,
1
);
TAP_TEST
(
KAVp
.
affect
==
Vplus
,
TEST_KMERAFFECT_CONSTRUCTOR
,
""
);
TAP_TEST
(
KAVm
.
affect
==
Vminus
,
TEST_KMERAFFECT_CONSTRUCTOR
,
""
);
TAP_TEST
(
KAJp
.
affect
==
Jplus
,
TEST_KMERAFFECT_CONSTRUCTOR
,
""
);
KmerAffect
test
=
KAVp
;
TAP_TEST
(
test
.
affect
==
KAVp
.
affect
,
TEST_KMERAFFECT_AFFECTATION
,
""
);
test
+=
KAVp
;
TAP_TEST
(
test
.
affect
==
KAVp
.
affect
,
TEST_KMERAFFECT_ADD
,
""
);
test
+=
KAVm
;
TAP_TEST
(
test
==
AFFECT_AMBIGUOUS
,
TEST_KMERAFFECT_ADD
,
""
);
KmerAffect
unknown
;
TAP_TEST
(
unknown
==
AFFECT_UNKNOWN
,
TEST_KMERAFFECT_CONSTRUCTOR
,
""
);
TAP_TEST
(
unknown
.
isUnknown
(),
TEST_KMERAFFECT_UNKNOWN
,
""
);
TAP_TEST
(
unknown
.
getStrand
()
==
0
,
TEST_KMERAFFECT_STRAND
,
""
);
TAP_TEST
(
unknown
.
getLabel
()
==
AFFECT_UNKNOWN_SYMBOL
,
TEST_KMERAFFECT_LABEL
,
""
);
unknown
+=
KAVm
;
TAP_TEST
(
unknown
.
affect
==
KAVm
,
TEST_KMERAFFECT_ADD
,
""
);
unknown
+=
KAJp
;
TAP_TEST
(
unknown
==
AFFECT_AMBIGUOUS
,
TEST_KMERAFFECT_ADD
,
""
);
TAP_TEST
(
unknown
.
isAmbiguous
(),
TEST_KMERAFFECT_AMBIGUOUS
,
""
);
TAP_TEST
(
unknown
.
getLabel
()
==
AFFECT_AMBIGUOUS_SYMBOL
,
TEST_KMERAFFECT_LABEL
,
""
);
TAP_TEST
(
unknown
.
getStrand
()
==
0
,
TEST_KMERAFFECT_STRAND
,
""
);
TAP_TEST
(
KAVp
.
getStrand
()
==
1
,
TEST_KMERAFFECT_STRAND
,
""
);
TAP_TEST
(
KAVm
.
getStrand
()
==
-
1
,
TEST_KMERAFFECT_STRAND
,
""
);
TAP_TEST
(
KAJp
.
getStrand
()
==
1
,
TEST_KMERAFFECT_STRAND
,
""
);
TAP_TEST
(
KAVp
.
getLabel
()
==
"V"
,
TEST_KMERAFFECT_LABEL
,
""
);
TAP_TEST
(
KAVm
.
getLabel
()
==
"V"
,
TEST_KMERAFFECT_LABEL
,
""
);
TAP_TEST
(
KAJp
.
getLabel
()
==
"J"
,
TEST_KMERAFFECT_LABEL
,
""
);
ostringstream
ossKA
,
ossA
;
ossKA
<<
KAVp
;
ossA
<<
Vplus
;
TAP_TEST
(
ossA
.
str
()
==
ossKA
.
str
(),
TEST_KMERAFFECT_OUT
,
""
);
ossKA
<<
KAVm
;
ossA
<<
Vminus
;
TAP_TEST
(
ossA
.
str
()
==
ossKA
.
str
(),
TEST_KMERAFFECT_OUT
,
""
);
ossKA
<<
KAJp
;
ossA
<<
Jplus
;
TAP_TEST
(
ossA
.
str
()
==
ossKA
.
str
(),
TEST_KMERAFFECT_OUT
,
""
);
}
void
testKmerAffectComparison
()
{
KmerAffect
Vminus
(
"V"
,
-
1
);
KmerAffect
Vplus
(
"V"
,
1
);
KmerAffect
Jplus
(
"J"
,
1
);
TAP_TEST
(
!
(
Vminus
==
Vplus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
!=
Vplus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<
Vplus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>
Vplus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<=
Vplus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>=
Vplus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
==
Jplus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
!=
Jplus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<=
Jplus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>=
Jplus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<
Jplus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>
Jplus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
==
Vminus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
!=
Vminus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
<
Vminus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
!
(
Vminus
>
Vminus
),
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
<=
Vminus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
TAP_TEST
(
Vminus
>=
Vminus
,
TEST_KMERAFFECT_COMPARISON
,
""
);
}
void
testKmerAffect
()
{
testAffect
();
testKmerAffectClass
();
testKmerAffectComparison
();
}
algo/tests/tests.cpp
View file @
071b5b24
...
...
@@ -2,6 +2,7 @@
#include "tests.h"
#include "testTools.cpp"
#include "testKmerAffect.cpp"
#include "testStorage.cpp"
#include "testAffectAnalyser.cpp"
#include "testBugs.cpp"
...
...
@@ -18,6 +19,7 @@ int main(void) {
testTools
();
testStorage
();
testKmerAffect
();
testAffectAnalyser
();
testBugs
();
testCluster
();
...
...
algo/tests/tests.h
View file @
071b5b24
...
...
@@ -33,6 +33,22 @@ enum {
TEST_KMERSTORE_GET_S
,
TEST_KMERSTORE_GET_SEED
,
/* KmerAffect */
TEST_AFFECT_STRAND
,
TEST_AFFECT_CHAR
,
TEST_AFFECT_COMPARISON
,
TEST_AFFECT_TO_STRING
,
TEST_AFFECT_OUT
,
TEST_KMERAFFECT_CONSTRUCTOR
,
TEST_KMERAFFECT_AFFECTATION
,
TEST_KMERAFFECT_ADD
,
TEST_KMERAFFECT_UNKNOWN
,
TEST_KMERAFFECT_AMBIGUOUS
,
TEST_KMERAFFECT_STRAND
,
TEST_KMERAFFECT_LABEL
,
TEST_KMERAFFECT_COMPARISON
,
TEST_KMERAFFECT_OUT
,
/* Affect analyzer */
TEST_AA_COUNT
,
TEST_AA_GET_AFFECT
,
...
...
@@ -135,6 +151,22 @@ inline void declare_tests() {
RECORD_TAP_TEST
(
TEST_KMERSTORE_GET_S
,
"Testing getK() in KmerStore"
);
RECORD_TAP_TEST
(
TEST_KMERSTORE_GET_SEED
,
"Testing getK() in KmerStore"
);
RECORD_TAP_TEST
(
TEST_AFFECT_STRAND
,
"affect_strand()"
);
RECORD_TAP_TEST
(
TEST_AFFECT_CHAR
,
"affect_char()"
);
RECORD_TAP_TEST
(
TEST_AFFECT_COMPARISON
,
"Comparison operators for affect_t"
);
RECORD_TAP_TEST
(
TEST_AFFECT_TO_STRING
,
"toString() for affect_t"
);
RECORD_TAP_TEST
(
TEST_AFFECT_OUT
,
"operator<< for affect_t"
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_CONSTRUCTOR
,
"KmerAffect constructor"
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_AFFECTATION
,
"KmerAffect operator="
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_ADD
,
"KmerAffect operator +="
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_UNKNOWN
,
"KmerAffect::isUnknown()"
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_AMBIGUOUS
,
"KmerAffect::isAmbiguous()"
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_STRAND
,
"KmerAffect::getStrand()"
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_LABEL
,
"KmerAffect::getLabel()"
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_COMPARISON
,
"KmerAffect comparison operators"
);
RECORD_TAP_TEST
(
TEST_KMERAFFECT_OUT
,
"KmerAffect operator<<"
);
RECORD_TAP_TEST
(
TEST_AA_COUNT
,
"AffectAnalyser.count()"
);
RECORD_TAP_TEST
(
TEST_AA_GET_AFFECT
,
"AffectAnalyser.getAffectation()"
);
RECORD_TAP_TEST
(
TEST_AA_GET_DISTINCT_AFFECT
,
"AffectAnalyser.getDistinctAffectations()"
);
...
...
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