Tests: test KmerAffect

algo/tests/testKmerAffect.cpp

+#include "tests.h"
+#include <core/kmeraffect.h>
+
+void testAffect() {
+  affect_t Vminus = {'V'}, Vplus = {'V'};
+  Vplus.c |= 1 << 7;
+  affect_t Jplus = {'J'};
+  Jplus.c |= 1 << 7;
+
+
+  TAP_TEST(affect_strand(Vminus) == -1, TEST_AFFECT_STRAND, "");
+  TAP_TEST(affect_strand(Vplus) == 1, TEST_AFFECT_STRAND, "");
+
+  TAP_TEST(affect_char(Vminus) == 'V', TEST_AFFECT_CHAR, "");
+  TAP_TEST(affect_char(Vplus) == 'V', TEST_AFFECT_CHAR, "");
+  TAP_TEST(affect_char(Jplus) == 'J', TEST_AFFECT_CHAR, "");
+
+  TAP_TEST(! (Vminus == Vplus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(Vminus != Vplus, TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus < Vplus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(Vminus > Vplus, TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus <= Vplus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(Vminus >= Vplus, TEST_AFFECT_COMPARISON, "");
+
+  TAP_TEST(! (Vminus == Jplus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(Vminus != Jplus, TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus <= Jplus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(Vminus >= Jplus, TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus < Jplus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(Vminus > Jplus, TEST_AFFECT_COMPARISON, "");
+
+  TAP_TEST(Vminus == Vminus, TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus != Vminus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus < Vminus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus > Vminus), TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(Vminus <= Vminus, TEST_AFFECT_COMPARISON, "");
+  TAP_TEST(Vminus >= Vminus, TEST_AFFECT_COMPARISON, "");
+
+  TAP_TEST(toString(Vminus) == "-V", TEST_AFFECT_TO_STRING, toString(Vminus));
+  TAP_TEST(toString(Vplus) == "+V", TEST_AFFECT_TO_STRING, toString(Vplus));
+  TAP_TEST(toString(Jplus) == "+J", TEST_AFFECT_TO_STRING, toString(Jplus));
+  TAP_TEST(toString(AFFECT_UNKNOWN.affect) == " _", TEST_AFFECT_TO_STRING, "");
+  TAP_TEST(toString(AFFECT_AMBIGUOUS.affect) == " ?", TEST_AFFECT_TO_STRING, "");
+
+  ostringstream oss;
+  oss << Vminus;
+  TAP_TEST(toString(Vminus) == oss.str(), TEST_AFFECT_OUT, "");
+  ostringstream oss2;
+  oss2 << Vplus;
+  TAP_TEST(toString(Vplus) == oss2.str(), TEST_AFFECT_OUT, "");
+  ostringstream oss3;
+  oss3 << Jplus;
+  TAP_TEST(toString(Jplus) == oss3.str(), TEST_AFFECT_OUT, "");
+}
+
+void testKmerAffectClass() {
+  affect_t Vminus = {'V'}, Vplus = {'V'};
+  Vplus.c |= 1 << 7;
+  affect_t Jplus = {'J'};
+  Jplus.c |= 1 << 7;
+  KmerAffect KAVp("V", 1);
+  KmerAffect KAVm("V", -1);
+  KmerAffect KAJp("J", 1);
+
+  TAP_TEST(KAVp.affect == Vplus, TEST_KMERAFFECT_CONSTRUCTOR, "");
+  TAP_TEST(KAVm.affect == Vminus, TEST_KMERAFFECT_CONSTRUCTOR, "");
+  TAP_TEST(KAJp.affect == Jplus, TEST_KMERAFFECT_CONSTRUCTOR, "");
+
+  KmerAffect test = KAVp;
+  TAP_TEST(test.affect == KAVp.affect, TEST_KMERAFFECT_AFFECTATION, "");
+  test += KAVp;
+  TAP_TEST(test.affect == KAVp.affect, TEST_KMERAFFECT_ADD, "");
+  test += KAVm;
+  TAP_TEST(test == AFFECT_AMBIGUOUS, TEST_KMERAFFECT_ADD, "");
+  
+  KmerAffect unknown;
+  TAP_TEST(unknown == AFFECT_UNKNOWN, TEST_KMERAFFECT_CONSTRUCTOR, "");
+  TAP_TEST(unknown.isUnknown(), TEST_KMERAFFECT_UNKNOWN, "");
+  TAP_TEST(unknown.getStrand() == 0, TEST_KMERAFFECT_STRAND, "");
+  TAP_TEST(unknown.getLabel() == AFFECT_UNKNOWN_SYMBOL, TEST_KMERAFFECT_LABEL, "");
+  unknown += KAVm;
+  TAP_TEST(unknown.affect == KAVm, TEST_KMERAFFECT_ADD, "");
+  unknown += KAJp;
+  TAP_TEST(unknown == AFFECT_AMBIGUOUS, TEST_KMERAFFECT_ADD, "");
+  TAP_TEST(unknown.isAmbiguous(), TEST_KMERAFFECT_AMBIGUOUS, "");
+  TAP_TEST(unknown.getLabel() == AFFECT_AMBIGUOUS_SYMBOL, TEST_KMERAFFECT_LABEL, "");
+  TAP_TEST(unknown.getStrand() == 0, TEST_KMERAFFECT_STRAND, "");
+
+  TAP_TEST(KAVp.getStrand() == 1, TEST_KMERAFFECT_STRAND, "");
+  TAP_TEST(KAVm.getStrand() == -1, TEST_KMERAFFECT_STRAND, "");
+  TAP_TEST(KAJp.getStrand() == 1, TEST_KMERAFFECT_STRAND, "");
+
+  TAP_TEST(KAVp.getLabel() == "V", TEST_KMERAFFECT_LABEL, "");
+  TAP_TEST(KAVm.getLabel() == "V", TEST_KMERAFFECT_LABEL, "");
+  TAP_TEST(KAJp.getLabel() == "J", TEST_KMERAFFECT_LABEL, "");
+
+  ostringstream ossKA, ossA;
+  ossKA << KAVp;
+  ossA << Vplus;
+  TAP_TEST(ossA.str() == ossKA.str(), TEST_KMERAFFECT_OUT, "");
+
+  ossKA << KAVm;
+  ossA << Vminus;
+  TAP_TEST(ossA.str() == ossKA.str(), TEST_KMERAFFECT_OUT, "");
+
+  ossKA << KAJp;
+  ossA << Jplus;
+  TAP_TEST(ossA.str() == ossKA.str(), TEST_KMERAFFECT_OUT, "");
+}
+
+
+void testKmerAffectComparison() {
+  KmerAffect Vminus("V", -1);
+  KmerAffect Vplus("V", 1);
+  KmerAffect Jplus("J", 1);
+
+  TAP_TEST(! (Vminus == Vplus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(Vminus != Vplus, TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus < Vplus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(Vminus > Vplus, TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus <= Vplus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(Vminus >= Vplus, TEST_KMERAFFECT_COMPARISON, "");
+
+  TAP_TEST(! (Vminus == Jplus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(Vminus != Jplus, TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus <= Jplus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(Vminus >= Jplus, TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus < Jplus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(Vminus > Jplus, TEST_KMERAFFECT_COMPARISON, "");
+
+  TAP_TEST(Vminus == Vminus, TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus != Vminus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus < Vminus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(! (Vminus > Vminus), TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(Vminus <= Vminus, TEST_KMERAFFECT_COMPARISON, "");
+  TAP_TEST(Vminus >= Vminus, TEST_KMERAFFECT_COMPARISON, "");
+}
+
+void testKmerAffect() {
+  testAffect();
+  testKmerAffectClass();
+  testKmerAffectComparison();
+}

algo/tests/tests.cpp

@@ -2,6 +2,7 @@
 #include "tests.h"
 
 #include "testTools.cpp"
+#include "testKmerAffect.cpp"
 #include "testStorage.cpp"
 #include "testAffectAnalyser.cpp"
 #include "testBugs.cpp"
@@ -18,6 +19,7 @@ int main(void) {
  
   testTools();
   testStorage();
+  testKmerAffect();
   testAffectAnalyser();
   testBugs();
   testCluster();

algo/tests/tests.h

@@ -33,6 +33,22 @@ enum {
   TEST_KMERSTORE_GET_S,
   TEST_KMERSTORE_GET_SEED,
 
+  /* KmerAffect */
+  TEST_AFFECT_STRAND,
+  TEST_AFFECT_CHAR,
+  TEST_AFFECT_COMPARISON,
+  TEST_AFFECT_TO_STRING,
+  TEST_AFFECT_OUT,
+  TEST_KMERAFFECT_CONSTRUCTOR,
+  TEST_KMERAFFECT_AFFECTATION,
+  TEST_KMERAFFECT_ADD,
+  TEST_KMERAFFECT_UNKNOWN,
+  TEST_KMERAFFECT_AMBIGUOUS,
+  TEST_KMERAFFECT_STRAND,
+  TEST_KMERAFFECT_LABEL,
+  TEST_KMERAFFECT_COMPARISON,
+  TEST_KMERAFFECT_OUT,
+
   /* Affect analyzer */
   TEST_AA_COUNT,
   TEST_AA_GET_AFFECT,
@@ -135,6 +151,22 @@ inline void declare_tests() {
   RECORD_TAP_TEST(TEST_KMERSTORE_GET_S, "Testing getK() in KmerStore");
   RECORD_TAP_TEST(TEST_KMERSTORE_GET_SEED, "Testing getK() in KmerStore");
 
+  RECORD_TAP_TEST(TEST_AFFECT_STRAND, "affect_strand()");
+  RECORD_TAP_TEST(TEST_AFFECT_CHAR, "affect_char()");
+  RECORD_TAP_TEST(TEST_AFFECT_COMPARISON, "Comparison operators for affect_t");
+  RECORD_TAP_TEST(TEST_AFFECT_TO_STRING, "toString() for affect_t");
+  RECORD_TAP_TEST(TEST_AFFECT_OUT, "operator<< for affect_t");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_CONSTRUCTOR, "KmerAffect constructor");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_AFFECTATION, "KmerAffect operator=");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_ADD, "KmerAffect operator +=");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_UNKNOWN, "KmerAffect::isUnknown()");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_AMBIGUOUS, "KmerAffect::isAmbiguous()");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_STRAND, "KmerAffect::getStrand()");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_LABEL, "KmerAffect::getLabel()");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_COMPARISON, "KmerAffect comparison operators");
+  RECORD_TAP_TEST(TEST_KMERAFFECT_OUT, "KmerAffect operator<<");
+
+
   RECORD_TAP_TEST(TEST_AA_COUNT, "AffectAnalyser.count()");
   RECORD_TAP_TEST(TEST_AA_GET_AFFECT, "AffectAnalyser.getAffectation()");
   RECORD_TAP_TEST(TEST_AA_GET_DISTINCT_AFFECT, "AffectAnalyser.getDistinctAffectations()");