Commit 0644f019 authored by Committed by Marc DuezBrowse files
vidjil.cpp: output 'out/segmented.vdj.fa' only when the new option '-U' is set.
A very long time ago, 'out/segmented.vdj.fa' was considered to be the main output of Vidjil, giving the (heuristic) segmentation of each read. However, when many reads are segmented, writing this file to the disk can slow the software (until 25%)... and this file was used only to debug. By default, this file is now not produced. The main output, with a summary of windows and representative, is in 'out/windows.fa', 'out/seq/clone.fa-' and now 'out/vidjil.data'.