Commit 04507580 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil-algo: prepare CHANGELOG for release 2018.10

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This changelog concerns vijil-algo, the algorithmic part (C++) of the Vidjil platform.
2018-10-xx The Vidjil Team
* New option --alternative-genes, outputs germline genes beyond the most probable one (core/segment.cpp) #1459
* New warning W69 for equally probable germline genes (core/segment.cpp) #3575
* Improved again memory usage, creating bins only when necessary (core/readstorage.cpp) #3393
* Improved the full analysis pre-processing, extending -Z 1 based on probabilities (core/filter.cpp, core/math.cpp) #3225
* Refactored output handling (core/output.cpp) #3858
* New AIRR .tsv output (core/output.c) #2828
* New and updated unit and functional tests
2018-07-18 The Vidjil Team
* Cleaned memory after the heuristic, lowering memory usage up to 50% on datasets with many 1-read clones #2120 #3387
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