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For an unknown reason, Clang complained about the line: seed = IKmerStore<T>::seed because “error: no viable overloaded '='” It seemed to interpret one of the variable as const (which is not) as it indicated: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.1.1/../../../../include/c++/6.1.1/bits/basic_string.h:565:7: note: candidate function not viable: 'this' argument has type 'const string' (aka 'const basic_string<char>'), but method is not marked const The solution was to use a local variable. Clang was happy, but I don't see what really makes the difference.
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