• Mathieu Giraud's avatar
    vidjil.cpp: default window is now 50, both for VJ and V(D)J recombinations · 2d80348c
    Mathieu Giraud authored
    Previously, the default -w was 40 for VJ, and 60 for V(D)J, except in
    multi-locus identification (-g), when it was 40 even for V(D)J recombinations.
    For the majority of cases, setting -w to 50 is thus more conservative.
    Many users already tested -w 50 (or the less conservative -w 40) for IGH and
    found correct results.
    Now we have a uniform window size for all locus, allowing a better indexing
    and comparison of windows across experiments and configurations.