alternative_genes.should-get 617 Bytes
Newer Older
Cyprien Borée's avatar
Cyprien Borée committed
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
!REQUIRES: python $VIDJIL_DIR/tools/check_python_version.py
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -R 3 -c segment -x 1 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; cat out/Stanford_S22.vidjil | python $VIDJIL_DIR/tools/format_json.py -1

$ Presence of alternative:
1: "3alt"
1: "name": "IGHJ4.02"
1: "name": "IGHJ4.01"
1: "name": "IGHJ5.01"
1: "4alt"
1: "name": "IGHD3-22.01"
1: "name": "IGHD3-10.02"
1: "name": "IGHD3-10.01"
1: "5alt"
1: "name": "IGHV3-48.01"
1: "name": "IGHV3-48.02"
1: "name": "IGHV3-48.04"

$ The correct number of "name" field
w13:"name"