CHANGELOG.web 4.24 KB
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This changelog concerns the Vidjil web application, client and server.
As we are using continuous integration and deployment, some features are pushed on our servers between these releases.
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## 2021-05-05
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Improve analysis
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* New sequence aligner, flexible display of nucleotide/AA sequences, VDJ, CDR, and FR features
* New detecton and prediction of primer positions (Biomed2 and EuroClonality-NGS primer sets)
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* Add graph entry to show relatve distance between primer (genescan view) limited at the top 100 samples per sample
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* New report and axis, detailed reason of non-productivity
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Improve ergonomy
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* Better handling of saved settings (color by, naming choices)
* New button to open one sample with its analysis from the patient/sample database
* Color setting is used in repot
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Improve quality testing
* The server part of the tutorial is now tested

Other points
* Fix disgracious position in graph
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* Add more explicit warning about healthcare compliance
* Fix logout error for some instances (app.vidjil.org)
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## 2020-12-09

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* Possibility to create at once multiple patients/runs/sets by pasting data from the clipboard

Add new warnings
* Add warnings when the server is not approved for healthcare data (!813, see >vidjil.org/doc/healthcare>)
* Add warning to show variation in V(D)J designation or productivity prediction between samples (#4566, #4578)
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Improve quality testing
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* The tutorial is now tested, step by step (#2880)
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Improve internal database usage
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* Refactor some queries of the database. Filtering and searches are now way faster.
  Note that the basic query may be a little bit slower. (#3169)
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Other points
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* Fix error on clusterBy (#4495)
* Many other bug fixes
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## 2020-07-13

Better study full repertoires
* Genescan-like distributions on the full repertoire (preset 4) (!595, !551, !525)
* New configuration to export the full list of clones in AIRR format (with no clone limitation)

Clone list
* New options to lock clone sorting (!630, !564)

Time graph, working with several samples
* Better options to hide/show samples in the time graph (!565)
* Possibility to hide clones not present in the current sample (!564)
* New design of curves

Other points
* Better organization of configurations (!627)
* Free text zone in report
* Read merger: Flash instead of PEAR (#3911)
* Many bug fixes

## 2020-01
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	* New behaviour of graphList (#4105); Now you can hide/show sample directly from a list with checkbox, and button for automation
	  You can also hidding them by double clicking on their label in the timeline graphic.
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## 2017-10
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	* New tag mechanism to store/filter default or custom metadata on patient/runs/sets #2170 #2172 #2683
	* Added a second grid view when there is only one sample #2244
	* New experimental feature to add germline genes in the segmenter #1925
	* New axes with number of deleted nucleotides #2506
	* Better test process (jshint, nightmare.js) #2272 #2273
	* Moved continuous integration to Gitlab CI (.gitlab-ci.yml)
	* New and updated unit and functional tests
	* Bugs corrected: Fasta export #2628, values on axes #2540, spurious data #2598, timeout in segmenter #2559...

2017-05-23  Release %"Web 2017.05"
	* Refactor of the axes for the grid and bar plots. New features are forthcoming #1471 #1763 #2175
	* New option to download output files #2141 #2405
	* Refactor of the sequence view. The sequence view will soon be able to display V(D)J germline genes.
	* New setting to display shorter clone names (by default, allele is hidden when it is *01) #1679
	* Renamed "merge" to "cluster", more consistent clustering options, including undo #2336 #2335
	* New keyboard shortcuts on some browsers #1227
	* Made Docker configuration easier to update #2469
	* Improved CSV export with additional information on productivity and CDR3 #2428
	* Updated results on sample deletion #1631
	* Bugs corrected: #2304, #2371, #2386, #2402, #2466, ...

2017-03-23  Release %"Web 2017.03"
	* New server installation option to get data from mounted directories instead of uploading them #1588
	* New "color by clone" option #2205
	* New "hide clone" option #2227
	* Faster server processing, multi-threaded #1919
	* New paginated output of the sampleset pages #2037
	* Removed limit of 16 displayed samples into a set #2269
	* Bugs corrected: reports #1979, #2281, IMGT segmenter  #2273