mkdocs.yml 1.46 KB
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site_name: Vidjil

docs_dir: doc

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plugins:
    - gitlab_links:
         gitlab_url: 'https://gitlab.inria.fr/vidjil/vidjil'
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repo_url: https://gitlab.inria.fr/vidjil/vidjil
repo_name: gitlab

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nav:
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    - / : index.md
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    - Life scientist:
        - Web application user manual: user.md
        - Libraries and recombinations: locus.md
        - Tutorial "Mastering the Vidjil web application" 🔗: http://www.vidjil.org/doc/tutorial/mastering-vidjil.html
        - Demo access to app.vidjil.org 🔗: http://app.vidjil.org/
    - Bioinformatician:
        - vidjil-algo, command-line manual: vidjil-algo.md
        - fuse.py, converting and merging immune repertoire data: tools.md
        - Specification of the .vidjil format: vidjil-format.md
        - Specification of the warnings: warnings.md
        - Specification of the .should-vdj.fa tests: should-vdj.md
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        - Further developer documentation: http://www.vidjil.org/doc/#further-developer-documentation
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    - Server administrator:
        - Server administration (web): admin.md
        - Server installation and maintenance (docker): server.md
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        - Further developer documentation: http://www.vidjil.org/doc/#further-developer-documentation
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    - Quality, roadmap, credits:
        - Software and development quality: quality.md
        - Public datasets supporting Vidjil publications 🔗: http://www.vidjil.org/data
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        - Roadmap: roadmap.md
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        - Credits, references: credits.md
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extra_css:
    - mkdocs-extra.css