alternative_genes.should-get 692 Bytes
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!REQUIRES: python $VIDJIL_DIR/tools/check_python_version.py
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!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS --alternative-genes 3 -c designations -x 1 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; cat out/Stanford_S22.vidjil | python $VIDJIL_DIR/tools/format_json.py -1
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$ Presence of alternative:
1: "3alt"
1: "name": "IGHJ4.02"
1: "name": "IGHJ4.01"
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f1: "name": "IGHJ5.01"
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1: "4alt"
1: "name": "IGHD3-22.01"
1: "name": "IGHD3-10.02"
1: "name": "IGHD3-10.01"
1: "5alt"
1: "name": "IGHV3-48.01"
1: "name": "IGHV3-48.02"
1: "name": "IGHV3-48.04"

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$ Correct number of "name" fields (1 clone + 3*1 'best' genes + 3*3 'alternative' genes)
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w13:"name"