.gitlab-ci.yml 5.97 KB
Newer Older
1 2 3


before_script:
Mathieu Giraud's avatar
Mathieu Giraud committed
4
  - make demo
5 6
  - make data
  - make germline
7
  - make -C browser sha1
8
  - cp -p doc/analysis-example.vidjil browser/
9 10

stages:
11
  - test_tools
12
  - test_quality
13
  - test_unit
14
  - deploy_review
15
  - test_germlines
16
  - test_functional
17
  - test_functional_external
18
  - test_shouldvdj
19
  - coverage
20
  - prepare_release
21
  - release
Mathieu Giraud's avatar
Mathieu Giraud committed
22 23
  - valgrind_unit
  - valgrind_functional
24
  - prepare_deploy
25
  - deploy_prod
26

27 28 29 30 31 32 33
# Anchors

.coverage_dependency: &lcov_artifact
  artifacts:
    paths:
      - algo/lcov_test_*.filtered
    expire_in: 6hrs
34

35 36 37 38 39 40
# Tools

test_tools:
  stage: test_tools
  script: make -C tools/tests

41 42 43 44 45 46 47

# Germlines

test_germlines:
  stage: test_germlines
  script:
    - make -C germline get-all-data
Mathieu Giraud's avatar
Mathieu Giraud committed
48
    - make -C germline/tests
49
  only:
50
    - /^feature-.*g.*\/.*$/
51 52


Mathieu Giraud's avatar
Mathieu Giraud committed
53
# Algorithm
54 55 56

test_algo_unit:
  stage: test_unit
57
  script: make -C algo unit_coverage
58
  <<: *lcov_artifact
59
  only:
60
    - /^feature-.*a.*\/.*$/
61 62 63 64 65

test_tools_unit:
  stage: test_unit
  script: make -C tools/tests
  only:
66
    - /^feature-.*a.*\/.*$/
67 68 69

test_algo_should:
  stage: test_functional
70
  script: make -C algo should_coverage
71
  only:
72
    - /^feature-.*a.*\/.*$/
73
  <<: *lcov_artifact
74 75 76

test_algo_shouldvdj:
  stage: test_shouldvdj
77
  script: make -C algo shouldvdj_coverage
78
  <<: *lcov_artifact
79 80 81 82 83
  only:
    - /^feature-.*a.*\/.*$/

algo_coverage:
  stage: coverage
84
  coverage: /^\s*lines\.*:\s+([0-9.]+\%)/
85
  script: make -C algo lcov_reports
86
  only:
87
    - /^feature-.*a.*\/.*$/
88

Mathieu Giraud's avatar
Mathieu Giraud committed
89 90
algo_valgrind_unit:
  stage: valgrind_unit
91
  script: make -C algo valgrind_unit
Mathieu Giraud's avatar
Mathieu Giraud committed
92
  only:
93
    - /^feature-.*a.*\/.*$/
94 95
  tags:
    - valgrind
Mathieu Giraud's avatar
Mathieu Giraud committed
96 97 98

algo_valgrind_functional:
  stage: valgrind_functional
99
  script: make -C algo valgrind_should
Mathieu Giraud's avatar
Mathieu Giraud committed
100 101
  when: manual
  only:
102
    - /^feature-.*a.*\/.*$/
103 104
  tags:
    - valgrind
Mathieu Giraud's avatar
Mathieu Giraud committed
105

106 107 108 109 110
prepare_release:
  stage: prepare_release
  script: make -C algo release RELEASE_TAG='rc'
  when: manual
  only:
111
    - /^feature-.*a.*\/.*$/
112

113 114 115 116 117
release:
  stage: release
  script: make -C algo release RELEASE_TAG=`cat algo/release`
  when: manual
  only:
118
    - /^feature-.*a.*\/release$/
119
  artifacts:
120
    paths:
121 122
    - algo/releases/vidjil-algo-`cat algo/release`.tar.gz
    - algo/releases/vidjil-algo-`cat algo/release`/vidjil-algo-`cat algo/release`_`uname -m`
123
  allow_failure: false
124 125
  tags:
    - ubuntu-16.04-amd64
126

127 128 129 130 131 132 133 134 135 136 137 138 139 140
copy_release:
  stage: prepare_deploy
  script:
    - |
      for repo in $ALGO_REPOSITORIES; do
        echo "Copying release to $repo"
        scp algo/releases/vidjil-algo*.tar.gz algo/releases/vidjil-algo*/vidjil-algo-*_* $repo
      done
      release_name=$(cat algo/release)
      ssh $VIDJIL_WWW "cd /var/www/html/releases; ln -sf vidjil-algo-${release_name}.tar.gz vidjil-latest.tgz; ln -sf vidjil-algo-${release_name}_x86_64 vidjil-latest_x86_64"
      ssh $VIDJIL_BONSAI "cd /bio1/www/html/vidjil; scp vidjil-algo-${release_name}* VIDJIL_BONSAI_PROD:/bio1/www/html/vidjil"
  only:
    - /^feature-.*a.*\/release$/

141 142 143 144 145 146 147 148 149 150 151 152
deploy_release_prod:
  stage: deploy_prod
  only:
    - /^feature-.*a.*\/release$/
  script:
    - |
      release_name=$(cat algo/release)
      ssh $VIDJIL_SERVER "cd releases/vidjil;\
          tar xvzf vidjil-algo-${release_name}.tar.gz;\
          make -C vidjil-algo-${release_name}
          ln -sf vidjil-algo-${release_name} next"

Mathieu Giraud's avatar
Mathieu Giraud committed
153
# Client
154

155
test_browser_unit:
156
  stage: test_unit
Mathieu Giraud's avatar
Mathieu Giraud committed
157
  script: make unit_browser
158 159 160
  artifacts:
    paths:
    - browser/
161
  only:
162 163
    - /^feature-.*c.*\/.*$/
    - /^hotfix-.*c.*\/.*$/
Mathieu Giraud's avatar
Mathieu Giraud committed
164
    - prod-client
165
    - dev
166 167
  tags:
    - web
168

169 170
test_browser-functional:
  stage: test_functional
171 172 173 174
  script:
    - make -C browser
    - source /etc/profile.d/rvm.sh
    - rvm use 2.1.1
175 176 177 178 179
    - HEADLESS=1 make -C browser/test functional
  artifacts:
    paths:
    - browser/
  only:
180 181
    - /^feature-.*c.*\/.*$/
    - /^hotfix-.*c.*\/.*$/
182
    - prod-client
183 184
  tags:
    - web
185 186 187

test_browser-functional-external:
  stage: test_functional_external
188
  retry: 2
189 190 191 192 193
  script:
    - make -C browser
    - source /etc/profile.d/rvm.sh
    - rvm use 2.1.1
    - HEADLESS=1 make -C browser/test external
194 195 196
  artifacts:
    paths:
    - browser/
197
  only:
198 199
    - /^feature-.*c.*\/.*$/
    - /^hotfix-.*c.*\/.*$/
Mathieu Giraud's avatar
Mathieu Giraud committed
200
    - prod-client
201 202
  tags:
    - web
203

204 205
code_quality:
  stage: test_quality
206
  script: make -C browser quality
207
  only:
208 209
    - /^feature-.*c.*\/.*$/
    - /^hotfix-.*c.*\/.*$/
210
    - prod-client
211
    - dev
212 213
  tags:
    - web
214

Ryan Herbert's avatar
Ryan Herbert committed
215 216 217 218 219
# Server

test_server_unit:
    stage: test_unit
    script:
220 221
      - virtualenv $CI_BUILD_REF_SLUG
      - source $CI_BUILD_REF_SLUG/bin/activate
222
      - pip install -r requirements.txt
Ryan Herbert's avatar
Ryan Herbert committed
223
      - make -C server install_web2py_standalone
224
      - make -C server launch_fuse_server
225
      - make unit_server || (make -C server kill_fuse_server; deactivate; false)
Ryan Herbert's avatar
Ryan Herbert committed
226
      - make -C server kill_fuse_server
227
      - deactivate
Ryan Herbert's avatar
Ryan Herbert committed
228
    only:
229 230
      - /^feature-.*s.*\/.*$/
      - /^hotfix-.*s.*\/.*$/
Ryan Herbert's avatar
Ryan Herbert committed
231 232 233 234 235 236 237
      - prod-server
      - dev
    tags:
      - web

# Deployment

238 239
deploy_review:
  stage: deploy_review
240
  script:
241
    - make -C browser icons
242
    - echo "$REVIEW_CONFIG_JS" > browser/js/conf.js
243
    - rsync -av --delete browser $DEPLOY_SERVER:$DEPLOY_SERVER_PATH$CI_BUILD_REF_SLUG
244
  environment:
245
    name: review/$CI_BUILD_REF_NAME
Mikaël Salson's avatar
Mikaël Salson committed
246
    url: http://$CI_BUILD_REF_SLUG.ci.vidjil.org/?data=analysis-example.vidjil
Mathieu Giraud's avatar
Mathieu Giraud committed
247
    on_stop: stop_deploy_review
248
  only:
249 250
    - /^feature-.*c.*\/.*$/
    - /^hotfix-.*c.*\/.*$/
251 252
  tags:
    - web
253

254
deploy_prod:
255
  stage: deploy_prod
256
  script:
257 258 259 260 261 262 263
    - ssh $PROD_CLIENT_SERVER "
         cd $PROD_CLIENT_PATH;
         git fetch
         && git reset --hard origin/prod-client
         && make -C browser
         && make -C browser sha1
         && cp doc/analysis-example.vidjil browser/"
264 265
  environment:
    name: production
266
    url: http://$PROD_CLIENT_SERVER/?data=analysis-example.vidjil
267 268
  only:
    - prod-client
269 270
  tags:
    - web
271

272 273
stop_deploy_review:
  stage: deploy_review
274 275 276 277 278 279
  variables:
    GIT_STRATEGY: none
  script:
    - ssh $DEPLOY_SERVER "rm -rf $DEPLOY_SERVER_PATH$CI_BUILD_REF_SLUG"
  when: manual
  environment:
280
    name: review/$CI_BUILD_REF_NAME
281
    action: stop
282
  only:
283 284
    - /^feature-.*c.*\/.*$/
    - /^hotfix-.*c.*\/.*$/
285
  tags:
286
    - web