germlines.data 2.95 KB
Newer Older
1
germline_data = {
2
    
3
    "TRA": {
4
        "shortcut": "A",
5
        "color" : "#268bd2",
6 7 8 9 10 11
        "description": "Human T-cell receptor, alpha locus (14q11.2)",
        "5": ["TRAV.fa"],
        "3": ["TRAJ.fa"],
        "parameters": {
            "seed": "13s"
        }
12
    },
13

14
    "TRB": {
15
        "shortcut": "B",
16
        "color" : "#cb4b16",
17 18 19 20 21 22 23
        "description": "Human T-cell receptor, beta locus (7q34)",
        "5": ["TRBV.fa"],
        "4": ["TRBD.fa"],
        "3": ["TRBJ.fa"],
        "parameters": {
            "seed": "12s"
        }
24
    },
25

26
    "TRG": {
27
        "shortcut": "G",
28
        "color" : "#dc322f",
29
        "description": "Human T-cell receptor, gamma locus (7p14)",
30 31
        "5": ["TRGV.fa"],
        "3": ["TRGJ.fa"],
32 33 34
        "parameters": {
            "seed": "10s"
        }
35
    },
36

37
    "TRD": {
38
        "shortcut": "D",
39
        "color" : "#b58900",
40 41 42 43 44 45 46
        "description": "Human T-cell receptor, delta locus (14q11.2)",
        "5": ["TRDV.fa"],
        "4": ["TRDD.fa"],
        "3": ["TRDJ.fa"],
        "parameters": {
            "seed": "10s"
        }
47
    },
48 49 50 51 52 53

    "VdJa": {
        "shortcut": "a",
        "color" : "#46abf2",
        "description": "Human T-cell receptor, incomplete Vd-Ja rearrangements",
        "5": ["TRDV.fa"],
54
        "4": ["TRDD.fa"],
55 56
        "3": ["TRAJ.fa"],
        "parameters": {
57
            "seed": "13s"
58 59 60
        }
    },

61
    "TRD+": {
62
        "shortcut": "d",
63
        "color" : "#d5a920",
64 65
        "description": "Human T-cell receptor, delta locus (14q11.2), incomplete Dd2-Dd3 rearrangements",
        "follows": "TRD",
66 67
        "5": ["TRDV.fa", "TRDD2-01.fa"],
        "3": ["TRDJ.fa", "TRDD3-01.fa"]
68
    },
69

70
    "IGH": {
71
        "shortcut": "H",
72
        "color" : "#6c71c4",
73 74 75 76 77 78 79
        "description": "Human immunoglobulin, heavy locus (14q32.33)",
        "5": ["IGHV.fa"],
        "4": ["IGHD.fa"],
        "3": ["IGHJ.fa"],
        "parameters": {
            "seed": "12s"
        }
80
    },
81 82
    "IGH+": {
        "shortcut": "h",
83
        "color" : "#8c91e4",
84 85 86 87
        "description": "Human immunoglobulin, heavy locus (14q32.33), incomplete DH-JH rearrangements",
        "follows": "IGH",
        "5": ["IGHD.fa"],
        "3": ["IGHJ.fa"]
88
    },
89

90
    "IGK": {
91
        "shortcut": "K",
92
        "color" : "#2aa198",
93 94 95 96 97 98
        "description": "Human immunoglobulin, kappa locus (2p11.2)",
        "5": ["IGKV.fa"],
        "3": ["IGKJ.fa"],
        "parameters": {
            "seed": "11s"
        }
99 100
    },
    "IGK+": {
101
        "shortcut": "k",
102
        "color" : "#4ac1a8",
103 104
        "description": "Human immunoglobulin, kappa locus (2p11.2), Vk-KDE and Intron-KDE rearrangements",
        "follows": "IGK",
105 106
        "5": ["IGKV.fa", "IGK-INTRON.fa"],
        "3": ["IGK-KDE.fa"]
107
    },
108

109
    "IGL": {
110
        "shortcut": "L",
111
        "color" : "#d33682",
112 113 114 115 116 117
        "description": "Human immunoglobulin, lambda locus (22q11.2)",
        "5": ["IGLV.fa"],
        "3": ["IGLJ.fa"],
        "parameters": {
            "seed": "11s"
        }
118
    }
119 120

}