tools-align-trd.should 425 Bytes
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!NO_EXTRA:
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!LAUNCH: ../../tools/align -m 1 -i 3 -j 1 -x $VIDJIL_DATA/trd-dd2-dd3.fa $VIDJIL_DIR/germline/homo-sapiens/TRDD.fa 
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$ Load correct sequences
1:TRDD2.01_0//0_TRDJ1.01 .*trd-dd2-dd3.fa
1:M22153.TRDD2.01.*TRDD.fa

$ Local alignment
1: Local
1: 14 CCTTCCTAC
1:  0 CCTTCCTAC

$ Matrix, portion leading to the best score (36)
1: 14i  28.  18d   8d
1:  4i  18i  32.  22d
1:  4.   8i  22i  36.

$ Best score
1: score: 36