segmentation-2.fa 1.09 KB
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# Testing unsegmentation classification

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# Sequences outside any V(D)J locus

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>too_few_vj-1
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CTAGGCATGGCTCCTCTCCACAGGAAAACTCCACTCCAGTGCTCAGCTTGCAaCCTGGCACAGGCCAGCAGTTGaTGGAAGTCcGACACCTGTGAAGAAC
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>too_few_vj-2   #4728
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GCCTCAGGCCAGCCTTCCGCTCCTTGAAGCTGGTCTCCGCACAGTGCTGGTTCCGTCACCCCCACCCAGGGAAGCAGGTCTGAGCAGCTTGTCCTGGCTG

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>too_few_vj-3
CACAGCTAGAGATCCTTTATTAAAAGCACACTGTTGGTTTCTGCTCAGTTCTTTATTGATTGGTGTGCCGTTTTCTCTGGAAGCCTCTTAAGAACACAGT


# Fake sequences

>too_short
acgt

>strand IGKV1-12*01(revcomp)--IGKJ1*01
ggagggaaactgttagcctgttgacaatagtaagttgc
gtggacgttcggccaagggaccaaggtggaaatcaaac

>only_V TRDV1*01--nothing
ttacagctagaagattcagcaaagtacttttgtgctcttggggaact
CTAGGCATGGCTCCTCTCCACAGGAAAACTCCACCTAGGCATGGCTC

>only_J nothing--TRGJ1*01
CTAGGCATGGCTCCTCTCCACAGGAAAACTCCACCTAGGCATGGCTC
gaattattataagaaactctttggcagtggaacaacactggttgtcacag

>ambiguous TRGV1*01 TRGJ1*01 TRGV1*01 TRGJ1*01
ggaatcactccaggaaagtatgacactggaagcacaaggagcaattggaatttgaga
gaattattataagaaactctttggc
ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacagg
agtggaacaacactggttgtcacag

>too_short_w TRGV1*01 TRGJ1*01
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gccacctgggacagg
gaattattataagaa