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VIDJIL_ALGO_SRC = algo/
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VIDJIL_BROWSER_SRC = browser/
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VIDJIL_SERVER_SRC = server/

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TEE = python tools/tee.py -v

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algo:
	$(MAKE) -C algo

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test_browser: unit_browser functional_browser

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test_server: unit_server

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test_tools_if_python:
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	@((python tools/check_python_version.py && $(MAKE) test_tools) || (python tools/check_python_version.py || echo "!!! Bad python version, we skip tools tests..."))
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test_tools:
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	$(MAKE) -C tools/tests
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shouldvdj_generate:
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	@echo
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	rm -rf data/gen
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	mkdir -p data/gen
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	cd germline ; python generate-recombinations.py --random-deletions 8,4:3,1:5,3 --random-insertions 5,4 -e .01
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### Browser tests
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unit_browser:
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	$(MAKE) -C browser/test unit
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functional_browser:
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	$(MAKE) -C browser/test functional
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headless_browser:
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	$(MAKE) -C browser/test headless
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unit_server:
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	$(MAKE) -C server/ unit
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###

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data:
	$(MAKE) -C algo/tests/data

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demo germline browser server: %:
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	$(MAKE) -C $@
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cleanall: clean
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	$(MAKE) -C algo/tests/data $^
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	$(MAKE) -C germline $^
	$(MAKE) -C $(VIDJIL_ALGO_SRC) cleanall
	$(MAKE) -C server cleanall
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.PHONY: all test should clean cleanall distrib data germline unit_coverage should_coverage coverage data germline browser server doc algo
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# Browser
RELEASE_JS = $(VIDJIL_BROWSER_SRC)/js/release.js
RELEASE_BROWSER_ARCHIVE = vidjil-browser-$(RELEASE_TAG).tgz
DIST_BROWSER_DIR=vidjil-browser-$(RELEASE_TAG)
TEST_FILES_BROWSER= Makefile $(VIDJIL_BROWSER_SRC)/test/Makefile $(wildcard $(VIDJIL_BROWSER_SRC)/test/*.rb) $(wildcard $(VIDJIL_BROWSER_SRC)/test/QUnit/*)  $(wildcard $(VIDJIL_BROWSER_SRC)/test/QUnit/testFiles/*.js)
RELEASE_FILES_BROWSER=$(TEST_FILES_BROWSER) $(wildcard $(VIDJIL_BROWSER_SRC)/*.html) $(wildcard $(VIDJIL_BROWSER_SRC)/js/*.js) $(wildcard $(VIDJIL_BROWSER_SRC)/js/lib/*.js) $(wildcard $(VIDJIL_BROWSER_SRC)/css/*.css) 
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release_browser:
	$(info ==== Browser Release $(RELEASE_TAG) ====)

	# Tag the release
	if test "$(RELEASE_TAG)" != "notag"; then \
		git tag -f release-$(RELEASE_TAG); \
		echo 'RELEASE_TAG = "$(RELEASE_TAG)"' > $(RELEASE_JS); \
	fi

	mkdir -p release 
	rm -rf release/$(RELEASE_BROWSER_ARCHIVE) release/$(DIST_BROWSER_DIR)
	mkdir -p release/$(DIST_BROWSER_DIR)
	for file in  $(RELEASE_FILES_BROWSER); do\
		dir=release/$(DIST_BROWSER_DIR)/`dirname "$$file"`;	\
		mkdir -p $$dir;	\
		cp "$$file" $$dir;	\
	done
	cd release && tar cvzf  $(RELEASE_BROWSER_ARCHIVE) $(DIST_BROWSER_DIR) \
	&& rm -rf $(DIST_BROWSER_DIR)

	# Untag the source
	rm -f $(RELEASE_JS) ; touch $(RELEASE_JS)

	# Check archive
	cd release && tar xvfz $(RELEASE_BROWSER_ARCHIVE)
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	cd release/$(DIST_BROWSER_DIR) && $(MAKE) unit_browser
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