common-V-D.should-get 456 Bytes
Newer Older
1
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -KA -z 0 -s \\\\#\\\\#\\\\#\\\\#\\\\#-\\\\#\\\\#\\\\#\\\\#\\\\# -G $VIDJIL_DIR/germline/IGH  $VIDJIL_DIR/data/common-V-D.fa  ; cat out/common-V-D.affects
2
3
4
5

$ Segments the sequence
1: SEG  .* -> .* 1 

Mathieu Giraud's avatar
Mathieu Giraud committed
6
$ Find the good affects for the D segment, including a AMBIGUOUS k-mer, common with V
7
8
9
1:_ _ _ \\?.f.f.f.f.f.f _ _ _ _

$ The windows found by the KmerSegmenter has a fairly good position
10
2: 1 163 180 220