index.html 22 KB
Newer Older
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
<!doctype html>

<!-- 
  This file is part of "Vidjil" <http://bioinfo.lifl.fr/vidjil>, V(D)J repertoire browsing and analysis
  Copyright (C) 2013, 2014 by Marc Duez <marc.duez@lifl.fr> and the Vidjil Team
  Bonsai bioinformatics at LIFL (UMR CNRS 8022, Université Lille) and Inria Lille

  "Vidjil" is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation, either version 3 of the License, or
  (at your option) any later version.

  "Vidjil" is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with "Vidjil". If not, see <http://www.gnu.org/licenses/>
-->

<html>
  <head>
  
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
    <meta charset="utf-8">
    <title>Vidjil</title>
    <!--<link rel="stylesheet/less" type="text/css" href="css/style.less" />-->
    <link id="palette" rel="stylesheet" type="text/css" href="css/dark.css" /> 
    <!--[if lte IE 8]><script src="js/r2d3.js" charset="utf-8"></script><![endif]-->
    <!--[if gte IE 9]><!-->
    <script type="text/javascript" src='js/lib/d3.v3.js'></script>
    <!--<![endif]-->
    <script type="text/javascript" src="js/lib/jquery-1.9.1.min.js"></script>
    <script type="text/javascript" src='js/lib/StackBlur.js'></script>
    <script type="text/javascript" src='js/lib/jspdf.js'></script>
    <script type="text/javascript" src='js/lib/jspdf.plugin.addimage.js'></script>
    <script type="text/javascript" src='js/lib/jspdf.plugin.svgToPdf.js'></script>
    <script type="text/javascript" src='js/lib/jspdf.plugin.split_text_to_size.js'></script>
    <script type="text/javascript" src='js/lib/jspdf.plugin.standard_fonts_metrics.js'></script>
    <script type="text/javascript" src='js/lib/underscore.js'></script>
    <script type="text/javascript" src='js/lib/rgbcolor.js'></script>
    <script type="text/javascript" src='js/lib/file.js'></script>
    <script type="text/javascript" src="js/lib/less-1.5.0.min.js"></script>
44
    <script type="text/javascript" src='js/lib/jquery.zclip.js'></script>
45
46


47
48
49
50
51
52
53
54
55
56
    <script type="text/javascript" src='js/germline.js'></script>
    <script type="text/javascript" src='js/model.js'></script>
    <script type="text/javascript" src='js/segmenter.js'></script>
    <script type="text/javascript" src='js/list.js'></script>
    <script type="text/javascript" src="js/graph.js"> </script>
    <script type="text/javascript" src="js/scatterPlot.js"> </script>
    <script type="text/javascript" src='js/builder.js'></script>
    <script type="text/javascript" src='js/vidjil-style.js'></script>
    <script type="text/javascript" src='js/crossDomain.js'></script>
    <script type="text/javascript" src='js/pdf.js'></script>
57

58

59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
	
	<!--
	<link rel="stylesheet" href="http://code.jquery.com/ui/1.10.3/themes/smoothness/jquery-ui.css">
	<script src="http://code.jquery.com/ui/1.10.3/jquery-ui.js"></script>
	-->
	
  </head>

  <body onload="popupMsg(msg.welcome)">
  
    <div id="file_menu" >
    <span class="closeButton" onclick="cancel();">X</span>
    
    	<h2>Vidjil <span class='logo'>(beta)</span> &ndash; V(D)J repertoire browsing and analysis</h2>
	

	Data file (.data):<br/>
	<input id="upload_json" type="file" name="json" /></br>
	<p class='help'>The data file stores a set of clones on several points.</p>

	Analysis file (.analysis, optional):<br/>
	<input id="upload_pref" type="file" name="pref" /></br>
	<p class='help'>The analysis file stores all parameters set by the user (tags, colors, manual clusters).</p>

	<!--
	load only clones in the top <select id="limit_top" name="limit_top">
	  <option value="10">10</option>	
	  <option value="30">30</option>
	  <option value="100">100</option>
	</select> </br></br>
	
	<button onclick="document.getElementById('file_menu').style.display='none';
	m.load('upload_json','upload_pref', document.getElementById('limit_top').value)">start</button> 
	-->
	<button onclick="document.getElementById('file_menu').style.display='none';
	m.load('upload_json','upload_pref', 100)">start</button> 
	
    </div>
    
    <div id="analysis_menu" >
        <span class="closeButton" onclick="cancel();">X</span>
    	<h2>analysis menu</h2>
    	
	Analysis file :<br/>
	<input id="upload_analysis" type="file" name="analysis" /></br></br>
		
	<button onclick="document.getElementById('analysis_menu').style.display='none';
									m.loadAnalysis('upload_analysis');">start</button> 
    </div>
    
    <div id="top-container">
    
      <div class="menu" onmouseover="showSelector('loadSelector');"> file 
        <div id="loadSelector" class="selector">
	  <!-- <a class="buttonSelector" onclick="javascript:loadData()">load data/analysis</a> -->
	  <a class="buttonSelector" onclick="javascript:loadAnalysis()">load analysis</a>
	  <a class="buttonSelector" onclick="javascript:m.saveAnalysis()">save analysis</a>
          <!--<a class="buttonSelector" onclick="javascript:m.resetAnalysis()">reset analysis</a> -->
	  <!--<a class="buttonSelector" onclick="javascript:reset()">reset all</a> -->
	  <a class="buttonSelector" onclick="javascript:testPDF2()">export pdf (graph + selected clones)</a>
	</div>
      </div>

      <div id="norm" class="menu" onmouseover="showSelector('ratioSelector');"> normalize 
        <div id="ratioSelector" class="selector">
        <!--TODO generer automatiquement-->
	  <a class="buttonSelector" onclick="m.normalization_switch(false);">off</a>
	  <a class="buttonSelector" onclick="m.normalization_switch(true);">on</a> 
	</div>
      </div>
         
      <div class="menu" onmouseover="showSelector('groupSelector');"> analysis 
      	<div id="groupSelector" class="selector">
	  <a class="buttonSelector" onclick="sp.changeSplitMethod('gene_v', 'gene_j');">V / J (genes)</a> 
	  <a class="buttonSelector" onclick="sp.changeSplitMethod('allele_v', 'allele_j');">V / J (alleles)</a> 
	  <a class="buttonSelector" onclick="sp.changeSplitMethod('gene_v', 'n');">V / N length</a> 
	  <!--<a class="buttonSelector" onclick="sp.changeSplitMethod('gene_v', 'nSize');">V / N length + VJ deletions</a> -->
	  <a class="buttonSelector" onclick="sp.changeSplitMethod('gene_v', 'Size')">V / abundance at selected timepoint</a> 
	  <a class="buttonSelector" onclick="sp.changeSplitMethod('gene_v', 'bar')">V distribution</a> 
	</div>
      </div>

      <div class="menu" onmouseover="showSelector('colorSelector');" > color 
	<div id="colorSelector" class="selector">
	  <a class="buttonSelector" onclick="m.changeColorMethod('V');">by V</a>
	  <a class="buttonSelector" onclick="m.changeColorMethod('J');">by J</a>
	  <a class="buttonSelector" onclick="m.changeColorMethod('N2');">by N length</a>
	 <!-- <a class="buttonSelector" onclick="m.changeColorMethod('N');">by N length + VJ deletions</a> -->
	  <a class="buttonSelector" onclick="m.changeColorMethod('Tag');">by tag</a>
	  <a class="buttonSelector" onclick="m.changeColorMethod('abundance');">by abundance at selected timepoint</a>
	</div>
      </div>
      
      
      <div id="norm" class="menu" onmouseover="showSelector('displaySelector');"> display
        <div id="displaySelector" class="selector">
	  <ul>
	    
	    <li>
	      
	      <div>
          </br>
          <!-- <input id="rangeValue" type="text" size="3" value="10" readonly="true">-->
	      <input id="top_slider" type="range" min="5" max="100" step="5" value="10" 
	      onchange="m.displayTop(this.value)" />
	      </div>
	    </li>
	    

	    <li>
	      <div id="tagDisplay0" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor0"></span> <span class="tagName0 tn"></span>
	      </div>
	    </li>
	    <li>
	      <div id="tagDisplay1" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor1"></span> <span class="tagName1 tn"></span>
	      </div>
	    </li>
	    <li>
	      <div id="tagDisplay2" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor2"></span> <span class="tagName2 tn"></span>
	      </div>
	    </li>
	    <li>
	      <div id="tagDisplay3" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor3"></span> <span class="tagName3 tn"></span>
	      </div>
	    </li>
	    <li>
	      <div id="tagDisplay4" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor4"></span> <span class="tagName4 tn"></span>
	      </div>
	    </li>
	    <li>
	      <div id="tagDisplay5" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor5"></span> <span class="tagName5 tn"></span>
	      </div>
	    </li>
	    <li>
	      <div id="tagDisplay6" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor6"></span> <span class="tagName6 tn"></span>
	      </div>
	    </li>
	    <li>
	      <div id="tagDisplay7" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor7"></span> <span class="tagName7 tn"></span>
	      </div>
	    </li>
	    <li>
	      <div id="tagDisplay8" class="tagElem" onclick="nextDisplayTag(this)">
	      <span class="tagColorBox tagColor8"></span> <span class="tagName8 tn"></span>
	      </div>
	    </li>
	    
	  </ul>

	</div>
	
      </div>
      

      <div class="menu" onmouseover="showSelector('clusterSelector');" > cluster
    <div id="clusterSelector" class="selector">
      <a class="buttonSelector" onclick="m.resetClones();">reset</a>
      <a class="buttonSelector" onclick="m.clusterBy('_clonotype');">clonotype</a>
      <a class="buttonSelector" onclick="m.clusterBy('V');">V gene + allele</a>
      <a class="buttonSelector" onclick="m.clusterBy('J');">J gene + allele</a>
      <a class="buttonSelector" onclick="m.clusterBy('_target');">target</a>
      <a class="buttonSelector" onclick="m.clusterBy('_target.V-GENE');">target V</a>
      <a class="buttonSelector" onclick="m.clusterBy('_target.J-GENE');">target J</a>


    </div>
      </div>


      <div id="logo" style="float: right;" onclick="popupMsg(msg.welcome)">Vidjil <span class='logo'>(beta)</span></div>
     
      <div style="float: right" class="menu" onmouseover="showSelector('paletteSelector');"> palette 
        <div id="paletteSelector" class="selector">
	  <a class="buttonSelector" onclick="changeStyle(solarizeD)">dark</a>
	  <a class="buttonSelector" onclick="changeStyle(solarizeL)">light</a>
	</div>
      </div>

      <div id="fps" style="float: right;"> </div>
      
      <span></span>
    </div>

    <div id="mid-container" onmouseover="hideSelector()">
      <!-- LEFT-CONTAINER -->
      <span id="left-container">
      
      <div id="left">

	<div id="info">
	
	  <div id=info_data_file> &nbsp;</div>

	  <div id=info_analysis_file> &nbsp; </div>
	    
	  <div id="info_system"> &nbsp; </div>
	  
	  <div id="info_color_Tag" class="info_color" style="">tag colors
	    <span id="fastTag0" class="tagColorBox tagColor0" onclick="nextDisplayTag(this)"></span>
	    <span id="fastTag1" class="tagColorBox tagColor1" onclick="nextDisplayTag(this)"></span>
	    <span id="fastTag2" class="tagColorBox tagColor2" onclick="nextDisplayTag(this)"></span>
	    <span id="fastTag3" class="tagColorBox tagColor3" onclick="nextDisplayTag(this)"></span>
	    <span id="fastTag4" class="tagColorBox tagColor4" onclick="nextDisplayTag(this)"></span>
	    <span id="fastTag5" class="tagColorBox tagColor5" onclick="nextDisplayTag(this)"></span>
	    <span id="fastTag6" class="tagColorBox tagColor6" onclick="nextDisplayTag(this)"></span>
	    <span id="fastTag7" class="tagColorBox tagColor7" onclick="nextDisplayTag(this)"></span>
	    <span id="fastTag8" class="tagColorBox tagColor8" onclick="nextDisplayTag(this)"></span>
	  </div>
	  
	  <div id="info_color_N" class="info_color" style="display:none">N colors :
	    <span> N=0 </span>
	    <span class="gradient"></span>
	    <span id="info_n_max"> N=max</span>
	  </div>
	  
	  <div id="info_color_N2" class="info_color" style="display:none">N colors :
	    <span> N=0 </span>
	    <span class="gradient"></span>
	    <span id="info_n2_max"> N=max</span>
	  </div>
	  
	  <div id="info_color_abundance" class="info_color" style="display:none" >abundance colors :
	    <span> 0% </span>
	    <span class="gradient"></span>
	    <span id="info_size_max"> 100%</span>
	  </div>
	  
	</div>
	<!--
	<div id="display-bar">
	  <a class="smallbutton" onclick="m.decDisplayTop();"><</a>
	  top <span id=top_display></span>
	  <a class="smallbutton" onclick="m.incDisplayTop();">></a>
	  
	  <span id="fastTag0" class="tagColorBox tagColor0" onclick="nextDisplayTag(this)"></span>
	  <span id="fastTag1" class="tagColorBox tagColor1" onclick="nextDisplayTag(this)"></span>
	  <span id="fastTag2" class="tagColorBox tagColor2" onclick="nextDisplayTag(this)"></span>
	  <span id="fastTag3" class="tagColorBox tagColor3" onclick="nextDisplayTag(this)"></span>
	  <span id="fastTag4" class="tagColorBox tagColor4" onclick="nextDisplayTag(this)"></span>
	  <span id="fastTag5" class="tagColorBox tagColor5" onclick="nextDisplayTag(this)"></span>
	  <span id="fastTag6" class="tagColorBox tagColor6" onclick="nextDisplayTag(this)"></span>
	  <span id="fastTag7" class="tagColorBox tagColor7" onclick="nextDisplayTag(this)"></span>
	  <span id="fastTag8" class="tagColorBox tagColor8" onclick="nextDisplayTag(this)"></span>
	  <a class="button" onclick="showDisplayMenu();">>></a>
	</div>
	-->

	<div id="color-info" class="gradient_abundance">
	</div>
	
	<div id="sort-bar">

	  sort list by 
	  <a class="button" onclick="list.sortListByV();">V</a>
	  <a class="button" onclick="list.sortListByJ();">J</a>
	  <a class="button" onclick="list.sortListByTop();">top</a>
	  <a class="button" onclick="list.sortListBySize();">abundance</a>
	</div>
	
	  <div id="listClones"></div>
	
	  <div id="listSelect"></div>

      </div>
	
      </span>
      
      
      <div id="visu-container">
	<!-- VISU -->
337
	<div id="visu2">
338

339
340
341
	</div>
    <div id="visu-separator" >...</div>
<!--
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
	<div id="switch"> 
	  
	    <div style="float:left; background:#333044; width:22px; height:22px; margin:5px; " onclick="switchVisu(30,70);"> 
	      <div style="background:white; width:100%; height:25%;"></div> 
	    </div>
	  
	    <div style="float:left; background:#333044; width:22px; height:22px; margin:5px; " onclick="switchVisu(50,50);"> 
	      <div style="background:white; width:100%; height:50%;"></div>
	    </div>
	    
	    <div style="float:left; background:#333044; width:22px; height:22px; margin:5px; " onclick="switchVisu(70,30);"> 
	      <div style="background:white; width:100%; height:75%;"></div>
	    </div>
	    
	    <div style="float:left; background:#333044; width:22px; height:22px; margin:5px; " onclick="switchVisu(100,0);"> 
	      <div style="background:white; width:100%; height:100%;"></div>
	    </div>
    </div>
360
-->
361

362
	<div id="visu" onclick="">
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499

    </div>
	
    <!-- BOT-CONTAINER -->
	<!--  
    <div id="bot-container">
      <div id="focus-sequence"> > </div>

      <div id="align" style="display:none">
	<ul id="listSeq"></ul>
      </div>
    </div>
	-->
    
    <div id="log" style="display:none; position: fixed; top: 50px;right: 10px;width: 500px; font-family : monaco,terminal,courier,system; height: 150px;overflow-y: scroll;font-size: 14px;background-color: #333044;opacity: 0.5;padding: 10px;">log </div>
    
    <div id="tagSelector">
    <span class="closeButton" onclick="$('#tagSelector').hide('fast')">X</span>
    
      <div>tag for <span id=tag_name></span><span id=tag_id></span></div>
      <ul>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML) , 0), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox tagColor0"></span> <span class="tagName0 tn" id="tag0"></span></div>
	</li>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML) , 1), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox tagColor1"></span> <span class="tagName1 tn" id="tag1"></span></div>
	</li>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML) , 2), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox tagColor2"></span> <span class="tagName2 tn" id="tag2"></span></div>
	</li>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML) , 3), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox tagColor3"></span> <span class="tagName3 tn" id="tag3"></span></div>
	</li>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML) , 4), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox tagColor4"></span> <span class="tagName4 tn" id="tag4"></span></div>
	</li>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML) , 5), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox tagColor5"></span> <span class="tagName5 tn" id="tag5"></span></div>
	</li>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML) , 6), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox tagColor6"></span> <span class="tagName6 tn" id="tag6"></span></div>
	</li>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML) , 7), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox tagColor7"></span> <span class="tagName7 tn" id="tag7"></span></div>
	</li>
	<li onClick="m.changeTag(parseInt(document.getElementById('tag_id').innerHTML), 8 ), $('#tagSelector').hide('fast')">
	  <div class="tagElem" ><span class="tagColorBox "></span> <span class="tagName8 tn" id="tag8"></span></div>
	</li>
	
      </ul>
    </div>
    <!--
    <div id="display-menu">
      <span class="closeButton" onclick="showDisplayMenu();">X</span>
       <h2>Display menu</h2>
    
      <ul>
      
      
	<li>
	  <div> top <input id="rangeValue" type="text" size="3" value="10"
	  readonly="true">
	  <input id="top_slider" type="range" min="5" max="100" step="5" value="10" 
	  onchange="m.displayTop(this.value)" />
	  </div>
	</li>
	<li>
	<span class="tn"></span>
	<span class="tagD">hide</span>
	<span class="tagD">show</span>
	</li>
	<li>
	  <div id="tagDisplay0" class="tagElem"><span class="tagColorBox tagColor0"></span> <span class="tagName0 tn"></span>
	  <input class="tagD" type="radio" name="radio0" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio0" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	<li>
	  <div id="tagDisplay1" class="tagElem"><span class="tagColorBox tagColor1"></span> <span class="tagName1 tn"></span>
	  <input class="tagD" type="radio" name="radio1" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio1" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	<li>
	  <div id="tagDisplay2" class="tagElem"><span class="tagColorBox tagColor2"></span> <span class="tagName2 tn"></span>
	  <input class="tagD" type="radio" name="radio2" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio2" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	<li>
	  <div id="tagDisplay3" class="tagElem"><span class="tagColorBox tagColor3"></span> <span class="tagName3 tn"></span>
	  <input class="tagD" type="radio" name="radio3" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio3" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	<li>
	  <div id="tagDisplay4" class="tagElem"><span class="tagColorBox tagColor4"></span> <span class="tagName4 tn"></span>
	  <input class="tagD" type="radio" name="radio4" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio4" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	<li>
	  <div id="tagDisplay5" class="tagElem"><span class="tagColorBox tagColor5"></span> <span class="tagName5 tn"></span>
	  <input class="tagD" type="radio" name="radio5" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio5" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	<li>
	  <div id="tagDisplay6" class="tagElem"><span class="tagColorBox tagColor6"></span> <span class="tagName6 tn"></span>
	  <input class="tagD" type="radio" name="radio6" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio6" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	<li>
	  <div id="tagDisplay7" class="tagElem"><span class="tagColorBox tagColor7"></span> <span class="tagName7 tn"></span>
	  <input class="tagD" type="radio" name="radio7" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio7" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	<li>
	  <div id="tagDisplay8" class="tagElem"><span class="tagColorBox tagColor8"></span> <span class="tagName8 tn"></span>
	  <input class="tagD" type="radio" name="radio8" value=0 onclick="changeDisplayTag(this)">
	  <input class="tagD" type="radio" name="radio8" value=1 onclick="changeDisplayTag(this)">
	  </div>
	</li>
	
      </ul>
    </div>
    -->
    
    <div id="bot-container">
    
      <div class="separator">
	<span class="button" onclick="m.merge()">merge</span>
	<span class="button" onclick="segment.align()">align</span>
	<span class="button" onclick="segment.sendTo('IMGT')">❯ to IMGT/V-QUEST</span>
	<span class="button" onclick="segment.sendTo('igBlast')">❯ to IgBlast</span>
500
    <span id="toClipBoard" class="button">❯ to clipBoard</span>
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515

      </div>
    
      <ul id="listSeq">
      </ul>
    </div>
    
    <div id="frame-container"></div>
    
    <div id="popup-container">
    <span class="closeButton" onclick="closePopupMsg()">X</span>
      <div id="popup-msg">
      </div>
    </div>

516
517
518
    <div id="clipBoard">
    </div>

519
520
521
522
523
524
525
526
527
528
529
530
531
532
    <div id="data-container">
    <span class="closeButton" onclick="closeDataBox()">X</span>
      <div id="data-msg">
      </div>
    </div>
    
    <form id="form">
    </form>

  </body>
            <script type="text/javascript" src="js/main.js"> </script>
</html>