From af36dd18c80711937ad74f4e2cbbddda05f30de3 Mon Sep 17 00:00:00 2001
From: Thomas Guyet <thomas.guyet@inria.fr>
Date: Mon, 3 Mar 2025 10:53:07 +0100
Subject: [PATCH] reformat files with black
---
Marie/Simu_VICAN.py | 13 +++++--------
Marie/pathways.py | 6 +++---
2 files changed, 8 insertions(+), 11 deletions(-)
diff --git a/Marie/Simu_VICAN.py b/Marie/Simu_VICAN.py
index 5ed2a08..98542c6 100644
--- a/Marie/Simu_VICAN.py
+++ b/Marie/Simu_VICAN.py
@@ -1,25 +1,22 @@
-##### Simulation âge
-
+"""Script for simulating a database inspired by the VICAN study (breast cancer)"""
+import logging
+import random as rd
import numpy as np
import pandas as pd
from scipy.stats import truncnorm, bernoulli
-import random as rd
from pathways import P1, P2, P3, P4, P5, P6, P7, P8, P9, P10
from SNDSGenerator.simuExternal import simuExternal
from SNDSGenerator.simulationDB import simDB
-import logging
+# pylint: disable=C0103,C0116
logging.basicConfig(filename="debug.log", encoding="utf-8", level=logging.DEBUG)
-
-### Profil 1
-
# Nombre total de points à générer
# total_points = 10500
-total_patients = 105
+total_patients = 10500
# Définition des proportions pour chaque tranche d'âge
proportions = [0.2143, 0.2571, 0.2857, 0.2429]
diff --git a/Marie/pathways.py b/Marie/pathways.py
index e5008d0..12ca493 100644
--- a/Marie/pathways.py
+++ b/Marie/pathways.py
@@ -1221,7 +1221,7 @@ class CT_bi(pathwayInjector):
# change the type of ATC drugs (bitherapy)
ucd_list = list(self.code_CT_ATC.keys())
ucd_list.remove(self.ucd_atc)
- self.ucd_atc = rd.choice( ucd_list )
+ self.ucd_atc = rd.choice(ucd_list)
self.ucd = rd.choice(self.code_CT_ATC[self.ucd_atc])
nb = int(rd.uniform(2, 5))
for _ in range(nb):
@@ -1610,7 +1610,7 @@ class P7(pathwayInjector):
# choose another drug code for CT (bitherapy)
ucd_list = list(therapy_phase1.code_CT_ATC.keys())
ucd_list.remove(therapy_phase1.ucd_atc)
- ucd_atc = rd.choice( ucd_list )
+ ucd_atc = rd.choice(ucd_list)
ucd = rd.choice(therapy_phase1.code_CT_ATC[ucd_atc])
while i < 12:
care = ShortHospStay(patient, self.sim.etablissements[0], "Z511")
@@ -1767,7 +1767,7 @@ class P8(pathwayInjector):
# choose another drug code for CT (bitherapy)
ucd_list = list(therapy_phase1.code_CT_ATC.keys())
ucd_list.remove(therapy_phase1.ucd_atc)
- ucd_atc = rd.choice( ucd_list )
+ ucd_atc = rd.choice(ucd_list)
ucd = rd.choice(therapy_phase1.code_CT_ATC[ucd_atc])
while i < 12:
care = ShortHospStay(patient, self.sim.etablissements[0], "Z511")
--
GitLab