Copy the externals directory to avoid pb with links

externals/otf/AUTHORS

+Andreas Knuepfer <andreas.knuepfer AT tu-dresden.de>
+Ronny Brendel <ronny.brendel AT tu-dresden.de>
+Matthias Jurenz <matthias.jurenz AT tu-dresden.de>
+Johannes Spazier <johannes.spazier AT tu-dresden.de>
+Michael Heyde <michael.heyde AT tu-dresden.de>
+Michael Kluge <michael.kluge AT tu-dresden.de>
+Holger Mickler <holger.mickler AT tu-dresden.de>
+Holger Brunst <holger.brunst AT tu-dresden.de>
+Hartmut Mix <hartmut.mix AT tu-dresden.de>

externals/otf/COPYING

+Copyright (c) 2005-2010, ZIH, Technische Universitaet Dresden,
+Federal Republic of Germany
+
+ All rights reserved.
+
+Redistribution and use in source and binary forms, with or without modification, 
+are permitted provided that the following conditions are met:
+
+- Redistributions of source code must retain the above copyright notice, 
+this list of conditions and the following disclaimer.
+
+- Redistributions in binary form must reproduce the above copyright notice, 
+this list of conditions and the following disclaimer in the documentation and/or 
+other materials provided with the distribution.
+
+- Neither the name of ZIH, TU Dresden nor the names of its contributors 
+may be used to endorse or promote products derived from this software without 
+specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR 
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 
+ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

externals/otf/LICENSE

+Copyright (c) 2005-2010, ZIH, Technische Universitaet Dresden,
+Federal Republic of Germany
+
+ All rights reserved.
+
+Redistribution and use in source and binary forms, with or without modification, 
+are permitted provided that the following conditions are met:
+
+- Redistributions of source code must retain the above copyright notice, 
+this list of conditions and the following disclaimer.
+
+- Redistributions in binary form must reproduce the above copyright notice, 
+this list of conditions and the following disclaimer in the documentation and/or 
+other materials provided with the distribution.
+
+- Neither the name of ZIH, TU Dresden nor the names of its contributors 
+may be used to endorse or promote products derived from this software without 
+specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR 
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 
+ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

externals/otf/Makefile.am

+ACLOCAL_AMFLAGS = -I config/m4
+
+if AMHAVEPYTHONSWIG
+OTFLIB_PY = otflib_py
+else
+OTFLIB_PY =
+endif
+
+SUBDIRS = \
+	otflib \
+	$(OTFLIB_PY) \
+	tools \
+	docu
+
+EXTRA_DIST= \
+	otf_vc08.sln \
+	config/otf_get_version.sh \
+	tests/hello/Makefile \
+	tests/hello/hello_otf.c \
+	tests/otf_python/groups.py \
+	tests/otf_python/test_read.py \
+	tests/otf_python/test_read_qt.py \
+	tests/otf_python/test_write.py \
+	VERSION

externals/otf/README

+ Open Trace Format (OTF)
+
+Detailed program analysis of massively parallel programs requires the recording of event based performance data during run-time and its visualisation with appropriate software tools like the Vampir framework.
+
+The specification of a convenient and powerful trace file format has to fulfill a large number of requirements. It must allow an efficient collection of the event based performance data on a parallel program environment. On the other hand it has to provide a very fast and convenient access to the large amount of performance data and the corresponding event definitions by the analysis software tools.
+
+To improve scalability for very large and massively parallel traces the Open Trace Format (OTF) has been developed at ZIH as a successor format to the Vampir Trace Format (VTF3).
+
+The Open Trace Format makes use of a portable ASCII encoding. It distributes single traces to multiple so called streams with one or more files each. Merging of records from multiple files is done transparently by the OTF library. The number of possible streams is not limited by the number of available file handles.
+
+The provided read/write library should be used as a convenient interface for third party software. The library supports efficient parallel and distributed access to trace data and offers selective reading access regarding arbitrary time intervals, process selection and record types.
+Optional auxiliary information can assist this selective access.
+
+The software package contains additional tools for trace date conversion or preparation.
+More information can be found in the provided documentation.
+
+OTF version is available as open source software under the BSD license, see 'COPYING'. The software comes as a source code package. It can be installed by using autoconf procedures, see 'INSTALL'.

externals/otf/TODO

+- re-design OTF's error/success return values for handlers and functions
+
+- ideas for future development
+	- add memory allocation/deallocation record types, how?
+	- have more semantics
+	- have less semantics
+	- add general purpose record types like (type/owner,key,value) with no semantics,
+		-- can be used freely, ignored if unknown, 
+		-- key/value are either uint64_t, array of uint64_t or text
+
+- add record to write wall clock time or epoch or year:month:day:hour:minute:second
+	with this, VT can record time at start and end of trace (request by Robert Henschel)
+
+- create a (graphical) tool for changing definition records:
+  - grouping functions
+  - ...
+
+- solve the problem that when only reading statistic records one cannot
+  determine the begin and end of a process !!!!!
+  You might introduce a new record for this. ( maybe like begin/endprocess
+  for events? )
+  You could also write a statistics comment record when the first event appears,
+  (in otfaux)
+
+- add new statistics record type that gives the caller-callee relation 
+	- only write this at the end of a trace run
+
+- use asynchronous write (aio_write) and maybe even read for performance 

externals/otf/VERSION

+# This is the VERSION file for OTF, describing the precise version of OTF in
+# this distribution. The various components of the version number below are
+# combined to form a single version number string.
+
+# major, minor, and sub are generally combined in the form
+# <major>.<minor>.<sub>. If sub is zero, then it is omitted.
+
+major=1
+minor=7
+sub=0
+
+# string is used for alpha, beta, or release tags. If it is non-empty, it will
+# be appended to the version number.
+#
+# history of release tags:
+# 0.2.*        octopussy
+# 0.3.*-1.1.*  starfish
+# 1.2.*        pufferfish
+# 1.3.*        jellyfish
+# 1.4.*        shark
+# 1.5.*        dolphin
+# 1.6.*        stingray
+# 1.7.*        catfish
+#
+
+string=catfish
+
+# library is used for the library versioning. These three numbers will be added
+# to the name of the library (e.g. libotf.so.1.2.3).
+# The meaning of these numbers is as follows (from left to right):
+#
+#   current            The number of the current API exported by the library.
+#                      That must be incremented, if the API has changed.
+#   revision           The implementation number of the most recent API
+#                      exported by the library. A value of '0' means that this
+#                      is the first implementation of the API.
+#                      If any of the source for the library has changed,
+#                      revision must be incremented.
+#   age                The number of previous additional APIs supported by the
+#                      library. If age is '2', the library can be linked into
+#                      executables built with a release of the library that
+#                      exported the current API number (current), or any of
+#                      the preceding two APIs.
+#                      If the new API is backward-compatible with the preceding
+#                      release, age must be incremented. Otherwise, reset age
+#                      to '0'.
+
+library=1:0:0
+

externals/otf/acinclude.m4

+m4_include(config/m4/acinclude.debug.m4)
+m4_include(config/m4/acinclude.math.m4)
+m4_include(config/m4/acinclude.mpi.m4)
+m4_include(config/m4/acinclude.omp.m4)
+m4_include(config/m4/acinclude.pydev.m4)
+m4_include(config/m4/acinclude.swig.m4)
+m4_include(config/m4/acinclude.swig_python.m4)
+m4_include(config/m4/acinclude.vtf3.m4)
+m4_include(config/m4/acinclude.verbose.m4)
+m4_include(config/m4/acinclude.zlib.m4)
+m4_include(config/m4/acarchive/ax_mpi.m4)
+m4_include(config/m4/acarchive/ax_openmp.m4)

externals/otf/config.h.in

+/* config.h.in.  Generated from configure.in by autoheader.  */
+
+/* Define to 1 if you have the `asprintf' function. */
+#undef HAVE_ASPRINTF
+
+/* Define to 1 if you have the declaration of `O_NOATIME', and to 0 if you
+   don't. */
+#undef HAVE_DECL_O_NOATIME
+
+/* Define to 1 if you have the <dlfcn.h> header file. */
+#undef HAVE_DLFCN_H
+
+/* Define to 1 if you have the <fcntl.h> header file. */
+#undef HAVE_FCNTL_H
+
+/* Define to 1 if fseeko (and presumably ftello) exists and is declared. */
+#undef HAVE_FSEEKO
+
+/* Define to 1 if you have the `gettimeofday' function. */
+#undef HAVE_GETTIMEOFDAY
+
+/* Define to 1 if you have the <inttypes.h> header file. */
+#undef HAVE_INTTYPES_H
+
+/* Define to 1 if you have the <memory.h> header file. */
+#undef HAVE_MEMORY_H
+
+/* Define to 1 if you have the `snprintf' function. */
+#undef HAVE_SNPRINTF
+
+/* Define to 1 if you have the <stddef.h> header file. */
+#undef HAVE_STDDEF_H
+
+/* Define to 1 if you have the <stdint.h> header file. */
+#undef HAVE_STDINT_H
+
+/* Define to 1 if you have the <stdlib.h> header file. */
+#undef HAVE_STDLIB_H
+
+/* Define to 1 if you have the `strdup' function. */
+#undef HAVE_STRDUP
+
+/* Define to 1 if you have the <strings.h> header file. */
+#undef HAVE_STRINGS_H
+
+/* Define to 1 if you have the <string.h> header file. */
+#undef HAVE_STRING_H
+
+/* Define to 1 if you have the <sys/param.h> header file. */
+#undef HAVE_SYS_PARAM_H
+
+/* Define to 1 if you have the <sys/stat.h> header file. */
+#undef HAVE_SYS_STAT_H
+
+/* Define to 1 if you have the <sys/time.h> header file. */
+#undef HAVE_SYS_TIME_H
+
+/* Define to 1 if you have the <sys/types.h> header file. */
+#undef HAVE_SYS_TYPES_H
+
+/* Define to 1 if you have the `__va_copy' function. */
+#undef HAVE_UNDERSCORE_VA_COPY
+
+/* Define to 1 if you have the <unistd.h> header file. */
+#undef HAVE_UNISTD_H
+
+/* Define to 1 if you have the `vasprintf' function. */
+#undef HAVE_VASPRINTF
+
+/* Define to 1 if you have the `va_copy' function. */
+#undef HAVE_VA_COPY
+
+/* Define to 1 if you have the `vsnprintf' function. */
+#undef HAVE_VSNPRINTF
+
+/* */
+#undef HAVE_VTF3
+
+/* */
+#undef HAVE_ZLIB
+
+/* Define to the sub-directory in which libtool stores uninstalled libraries.
+   */
+#undef LT_OBJDIR
+
+/* */
+#undef OTF_DEBUG
+
+/* */
+#undef OTF_VERBOSE
+
+/* Name of package */
+#undef PACKAGE
+
+/* Define to the address where bug reports for this package should be sent. */
+#undef PACKAGE_BUGREPORT
+
+/* Define to the full name of this package. */
+#undef PACKAGE_NAME
+
+/* Define to the full name and version of this package. */
+#undef PACKAGE_STRING
+
+/* Define to the one symbol short name of this package. */
+#undef PACKAGE_TARNAME
+
+/* Define to the home page for this package. */
+#undef PACKAGE_URL
+
+/* Define to the version of this package. */
+#undef PACKAGE_VERSION
+
+/* The size of `long', as computed by sizeof. */
+#undef SIZEOF_LONG
+
+/* Define to 1 if you have the ANSI C header files. */
+#undef STDC_HEADERS
+
+/* Version number of package */
+#undef VERSION
+
+/* Define to 1 to make fseeko visible on some hosts (e.g. glibc 2.2). */
+#undef _LARGEFILE_SOURCE
+
+/* Define to `unsigned int' if <sys/types.h> does not define. */
+#undef size_t

externals/otf/config/m4/acarchive/ax_openmp.m4

+dnl @synopsis AX_OPENMP([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
+dnl
+dnl @summary determine how to compile programs using OpenMP
+dnl
+dnl This macro tries to find out how to compile programs that use
+dnl OpenMP a standard API and set of compiler directives for parallel
+dnl programming (see http://www-unix.mcs/)
+dnl
+dnl On success, it sets the
+dnl OPENMP_CFLAGS/OPENMP_CXXFLAGS/OPENMP_F77FLAGS output variable to
+dnl the flag (e.g. -omp) used both to compile *and* link OpenMP
+dnl programs in the current language.
+dnl
+dnl NOTE: You are assumed to not only compile your program with these
+dnl flags, but also link it with them as well.
+dnl
+dnl If you want to compile everything with OpenMP, you should set:
+dnl
+dnl     CFLAGS="$CFLAGS $OPENMP_CFLAGS" 
+dnl     #OR#  CXXFLAGS="$CXXFLAGS $OPENMP_CXXFLAGS" 
+dnl     #OR#  FFLAGS="$FFLAGS $OPENMP_FFLAGS" 
+dnl
+dnl (depending on the selected language).
+dnl
+dnl The user can override the default choice by setting the
+dnl corresponding environment variable (e.g. OPENMP_CFLAGS).
+dnl
+dnl ACTION-IF-FOUND is a list of shell commands to run if an OpenMP
+dnl flag is found, and ACTION-IF-NOT-FOUND is a list of commands to run
+dnl it if it is not found. If ACTION-IF-FOUND is not specified, the
+dnl default action will define HAVE_OPENMP.
+dnl
+dnl @category InstalledPackages
+dnl @author Steven G. Johnson <stevenj@alum.mit.edu>
+dnl @version 2006-01-24
+dnl @license GPLWithACException
+
+AC_DEFUN([AX_OPENMP], [
+AC_PREREQ(2.59) dnl for _AC_LANG_PREFIX
+
+AC_CACHE_CHECK([for OpenMP flag of _AC_LANG compiler], ax_cv_[]_AC_LANG_ABBREV[]_openmp, [save[]_AC_LANG_PREFIX[]FLAGS=$[]_AC_LANG_PREFIX[]FLAGS
+ax_cv_[]_AC_LANG_ABBREV[]_openmp=unknown
+# Flags to try:  -fopenmp (gcc), -openmp (icc), -mp (SGI & PGI),
+#                -xopenmp (Sun), -omp (Tru64), -qsmp=omp (AIX),
+#                -Popenmp (NECSX), none
+ax_openmp_flags="-fopenmp -openmp -mp -xopenmp -omp -qsmp=omp -Popenmp none"
+if test "x$OPENMP_[]_AC_LANG_PREFIX[]FLAGS" != x; then
+  ax_openmp_flags="$OPENMP_[]_AC_LANG_PREFIX[]FLAGS $ax_openmp_flags"
+fi
+for ax_openmp_flag in $ax_openmp_flags; do
+  case $ax_openmp_flag in
+    none) []_AC_LANG_PREFIX[]FLAGS=$save[]_AC_LANG_PREFIX[] ;;
+    *) []_AC_LANG_PREFIX[]FLAGS="$save[]_AC_LANG_PREFIX[]FLAGS $ax_openmp_flag" ;;
+  esac
+  AC_TRY_COMPILE([], [
+#ifndef _OPENMP
+#  error "_OPENMP not defined"
+#endif
+  ], [ax_cv_[]_AC_LANG_ABBREV[]_openmp=$ax_openmp_flag; break])
+done
+[]_AC_LANG_PREFIX[]FLAGS=$save[]_AC_LANG_PREFIX[]FLAGS
+])
+if test "x$ax_cv_[]_AC_LANG_ABBREV[]_openmp" = "xunknown"; then
+  m4_default([$2],:)
+else
+  if test "x$ax_cv_[]_AC_LANG_ABBREV[]_openmp" != "xnone"; then
+    OPENMP_[]_AC_LANG_PREFIX[]FLAGS=$ax_cv_[]_AC_LANG_ABBREV[]_openmp
+  fi
+  m4_default([$1],:)
+fi
+])dnl AX_OPENMP

externals/otf/config/m4/acinclude.debug.m4

+dnl 	switch on/off additonal debug output in otf lib
+AC_DEFUN([WITH_DEBUG],
+[
+    AH_TEMPLATE(OTF_DEBUG, [], [switch on/off additonal debug checks in otf lib])
+
+    AC_ARG_WITH([debug],
+        AC_HELP_STRING([--with-debug],[additonal debug checks]),
+            [debug=$withval],
+            [debug=""])
+
+    if test "$debug" = yes; then
+     AC_DEFINE(OTF_DEBUG)
+    fi
+])
+

externals/otf/otflib_py/__init__.py

+from otf import *