diff --git a/tools/gen_wrappers.py b/tools/gen_wrappers.py
index 403a4e43a4cbed52580114fb3360e1992f1edae5..b82c05aca97c31af43d9afc80e00ddc134f0ce37 100755
--- a/tools/gen_wrappers.py
+++ b/tools/gen_wrappers.py
@@ -7,13 +7,13 @@
@copyright 2016-2017 University of Tennessee, US, University of
Manchester, UK. All rights reserved.
- @copyright 2017-2018 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2017-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
- @version 6.0.0
+ @version 6.1.0
@author Pierre Ramet
@author Mathieu Faverge
- @date 2017-05-04
+ @date 2020-01-21
"""
import os
@@ -22,7 +22,7 @@ import argparse
import wrappers
description = '''\
-Generates Fortran 90 and Python wrappers from the spm header files.'''
+Generates Fortran 90 and Python wrappers from the spm and pastix header files.'''
help = '''\
----------------------------------------------------------------------
@@ -44,7 +44,9 @@ parser.add_argument('args', nargs='*', action='store', help='Files to process')
opts = parser.parse_args()
# exclude inline functions from the interface
-exclude_list = [ "inline", "spmIntSort", "spmIntMSort" ]
+exclude_list = [ "inline", "spmIntSort", "spmIntMSort",
+ "orderDraw", "orderSupernodes", "pastixOrderCompute", "pastixOrderApplyLevelOrder",
+ "pastixOrderAddIsolate", "pastixOrderFindSupernodes" ]
def polish_file(whole_file):
"""Preprocessing and cleaning of the header file.
@@ -57,6 +59,9 @@ def polish_file(whole_file):
# Remove C comments:
clean_file = re.sub(r"(?s)/\*.*?\*/", "", clean_file)
clean_file = re.sub(r"//.*", "", clean_file)
+ # Remove BEGIN/END_C_DECLS statement:
+ clean_file = re.sub("BEGIN_C_DECLS", "", clean_file)
+ clean_file = re.sub("END_C_DECLS", "", clean_file)
# Remove C directives (multilines then monoline):
clean_file = re.sub(r"(?m)^#(.*[\\][\n])+.*?$", "", clean_file)
clean_file = re.sub("(?m)^#.*$", "", clean_file)
@@ -469,7 +474,7 @@ spm_enums = {
'description' : "SPM python wrapper to define enums and datatypes",
'header' : "# Start with __ to prevent broadcast to file importing enum\n"
"__spm_int__ = @SPM_PYTHON_INTEGER@\n"
- "__spm_mpi_enabled__ = @SPM_MPI_ENABLED@\n",
+ "__spm_mpi_enabled__ = @SPM_PYTHON_MPI_ENABLED@\n",
'footer' : "",
'enums' : { 'coeftype' : enums_python_coeftype,
'mtxtype' : " SymPosDef = trans.ConjTrans + 1\n HerPosDef = trans.ConjTrans + 2\n" }
@@ -492,7 +497,7 @@ spm_enums = {
'julia' : { 'filename' : "wrappers/julia/spm/src/spm_enums.jl.in",
'description' : "SPM julia wrapper to define enums and datatypes",
'header' :"const spm_int_t = @SPM_JULIA_INTEGER@\n"
- "const spm_mpi_enabled = @SPM_MPI_ENABLED@\n",
+ "const spm_mpi_enabled = @SPM_JULIA_MPI_ENABLED@\n",
'footer' : "",
'enums' : {}
},
@@ -540,7 +545,7 @@ spm = {
"end\n"
"libspm = spm_library_path()\n\n"
"if spm_mpi_enabled\n"
- " using MPI\n MPI.Init()\nend\n\n"
+ " using MPI\nend\n\n"
"function __get_mpi_type__()\n"
" if !spm_mpi_enabled\n"
" return Cint\n"
diff --git a/tools/wrappers/__init__.py b/tools/wrappers/__init__.py
index 17e01a2a81572561548f871573870076f9da0f10..9b57736398d1439cd2cda53eb74d179b1ec82bec 100644
--- a/tools/wrappers/__init__.py
+++ b/tools/wrappers/__init__.py
@@ -6,12 +6,12 @@ Wrappers
PaStiX wrapper generators module intialization
- @copyright 2017-2018 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2017-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
- @version 6.0.0
+ @version 6.1.0
@author Mathieu Faverge
- @date 2017-05-04
+ @date 2019-11-12
"""
diff --git a/tools/wrappers/wrap_fortran.py b/tools/wrappers/wrap_fortran.py
index e5ede65a58db5e88719b831fd740bc86e8cfaa52..805b33ae6639dae9438e8afdf629aaf5fc8fbaaa 100644
--- a/tools/wrappers/wrap_fortran.py
+++ b/tools/wrappers/wrap_fortran.py
@@ -7,17 +7,18 @@ Wrapper Fortran 90
PaStiX generator for the Fortran 90 wrapper
- @copyright 2017-2017 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2017-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
- @version 6.0.0
+ @version 6.0.3
@author Mathieu Faverge
- @date 2017-05-04
+ @date 2019-12-05
"""
import os
import re
import argparse
+import time
from . import *
# set indentation in the f90 file
@@ -137,12 +138,12 @@ class wrap_fortran:
!
! ''' + f['description'] + '''
!
-! @copyright 2017 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+! @copyright 2017-''' + time.strftime( "%Y" ) + ''' Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
! Univ. Bordeaux. All rights reserved.
!
-! @version 6.0.0
+! @version 6.0.3
! @author Mathieu Faverge
-! @date 2017-01-01
+! @date ''' + time.strftime( "%Y-%m-%d" ) + '''
!
! This file has been automatically generated with gen_wrappers.py
!
diff --git a/tools/wrappers/wrap_julia.py b/tools/wrappers/wrap_julia.py
index 3d39fcce84efd6e2b3f8f54d33a5fcc08c513d16..b4dc34239d1645b1799fef22c172817734b044f1 100644
--- a/tools/wrappers/wrap_julia.py
+++ b/tools/wrappers/wrap_julia.py
@@ -19,6 +19,7 @@ Wrapper Julia
import os
import re
import argparse
+import time
from . import *
indent=" "
@@ -98,13 +99,13 @@ class wrap_julia:
''' + f['description'] + '''
- @copyright 2019-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2020-''' + time.strftime( "%Y" ) + ''' Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
@version 6.0.0
@author Mathieu Faverge
@author Lebdaoui selmane
- @date 2020-06-18
+ @date ''' + time.strftime( "%Y-%m-%d" ) + '''
This file has been automatically generated with gen_wrappers.py
@@ -127,13 +128,14 @@ This file has been automatically generated with gen_wrappers.py
Translate it into constants."""
ename = enum[0]
params = enum[1]
+
# initialize a string with the fortran interface
bib = ""
Bib = ""
if ("SPM" in f['description']):
bib = "spm_"
Bib = "Spm"
- elif ("Pastix" in f['description']):
+ elif ("PaStiX" in f['description']):
bib = "pastix_"
Bib = "PASTIX"
py_interface = "@cenum " + bib + ename + "_t " + "{\n"
@@ -142,8 +144,9 @@ This file has been automatically generated with gen_wrappers.py
length=0
for param in params:
if ename == "mtxtype":
- param[1] = re.sub(r"trans.", Bib, param[1])
+ param[1] = re.sub(r"trans.", "Spm", param[1])
length = max( length, len(param[0]))
+
fmt="%-"+ str(length) + "s"
# loop over the arguments of the enum
@@ -240,6 +243,12 @@ This file has been automatically generated with gen_wrappers.py
func_line += ", "
else :
func_line += " "
- func_line+= ")::"+types_dict[return_type]
+
+ ret_val = types_dict[return_type]
+ if return_pointer == "*" :
+ ret_val = "Ptr{"+types_dict[return_type]+"}"
+ elif return_pointer == "**" :
+ ret_val = "Ptr{Ptr{"+types_dict[return_type]+"}}"
+ func_line += ")::" + ret_val
py_interface=cbinding_line + func_line + "\nend\n"
return py_interface
diff --git a/tools/wrappers/wrap_python.py b/tools/wrappers/wrap_python.py
index 47d2c635985f2d61757009c6eec74c89e4365fa7..b1656ef7c06b3eb88ddc0f5a81e3459352109baa 100644
--- a/tools/wrappers/wrap_python.py
+++ b/tools/wrappers/wrap_python.py
@@ -7,17 +7,18 @@ Wrapper Python
PaStiX generator for the python wrapper
- @copyright 2017-2017 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2017-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
- @version 6.0.0
+ @version 6.0.3
@author Mathieu Faverge
- @date 2017-05-04
+ @date 2019-12-05
"""
import os
import re
import argparse
+import time
from . import *
indent=" "
@@ -134,14 +135,14 @@ class wrap_python:
''' + f['description'] + '''
- @copyright 2017-2017 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2017-''' + time.strftime( "%Y" ) + ''' Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
- @version 6.0.0
+ @version 6.0.3
@author Pierre Ramet
@author Mathieu Faverge
@author Louis Poirel
- @date 2017-05-04
+ @date ''' + time.strftime( "%Y-%m-%d" ) + '''
This file has been automatically generated with gen_wrappers.py
diff --git a/wrappers/fortran90/src/spm_enums.F90 b/wrappers/fortran90/src/spm_enums.F90
index bcd328fbe30da2480505c69de325c90a4992a829..03a480db2c5ef208d9aafe79e54ca1cfdd84bb63 100644
--- a/wrappers/fortran90/src/spm_enums.F90
+++ b/wrappers/fortran90/src/spm_enums.F90
@@ -4,12 +4,12 @@
!
! SPM fortran 90 wrapper to define enums and datatypes
!
-! @copyright 2017 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+! @copyright 2017-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
! Univ. Bordeaux. All rights reserved.
!
-! @version 6.0.0
+! @version 6.0.3
! @author Mathieu Faverge
-! @date 2017-01-01
+! @date 2020-07-15
!
! This file has been automatically generated with gen_wrappers.py
!
diff --git a/wrappers/fortran90/src/spmf.f90 b/wrappers/fortran90/src/spmf.f90
index c13609ee9bbb31a3dd6ea710932d96f0250bf6d4..44c3677ef045af46e1995e318d8af14e566fef4a 100644
--- a/wrappers/fortran90/src/spmf.f90
+++ b/wrappers/fortran90/src/spmf.f90
@@ -4,12 +4,12 @@
!
! SPM Fortran 90 wrapper
!
-! @copyright 2017 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+! @copyright 2017-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
! Univ. Bordeaux. All rights reserved.
!
-! @version 6.0.0
+! @version 6.0.3
! @author Mathieu Faverge
-! @date 2017-01-01
+! @date 2020-07-15
!
! This file has been automatically generated with gen_wrappers.py
!
diff --git a/wrappers/julia/spm/src/spm.jl b/wrappers/julia/spm/src/spm.jl
index b6fb1156b04201a85b4a12e163b2d85fb36af675..8a2f1676d8b911e90139f232a54fd7683a248b88 100644
--- a/wrappers/julia/spm/src/spm.jl
+++ b/wrappers/julia/spm/src/spm.jl
@@ -4,17 +4,18 @@
SPM julia wrapper
- @copyright 2019-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2020-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
@version 6.0.0
@author Mathieu Faverge
@author Lebdaoui selmane
- @date 2020-06-18
+ @date 2020-07-15
This file has been automatically generated with gen_wrappers.py
=#
+
module spm
using CBinding
using Libdl
@@ -79,7 +80,7 @@ end
end
@cbindings libspm begin
- @cextern spmCopy( spm::Ptr{spmatrix_t} )::spmatrix_t
+ @cextern spmCopy( spm::Ptr{spmatrix_t} )::Ptr{spmatrix_t}
end
@cbindings libspm begin
@@ -107,11 +108,11 @@ end
end
@cbindings libspm begin
- @cextern spmScatter( spm::Ptr{spmatrix_t}, n::spm_int_t, loc2glob::Ptr{spm_int_t}, distByColumn::Cint, root::Cint, comm::__get_mpi_type__() )::spmatrix_t
+ @cextern spmScatter( spm::Ptr{spmatrix_t}, n::spm_int_t, loc2glob::Ptr{spm_int_t}, distByColumn::Cint, root::Cint, comm::__get_mpi_type__() )::Ptr{spmatrix_t}
end
@cbindings libspm begin
- @cextern spmGather( spm::Ptr{spmatrix_t}, root::Cint )::spmatrix_t
+ @cextern spmGather( spm::Ptr{spmatrix_t}, root::Cint )::Ptr{spmatrix_t}
end
@cbindings libspm begin
@@ -159,7 +160,7 @@ end
end
@cbindings libspm begin
- @cextern spmIntConvert( n::spm_int_t, input::Ptr{Cint} )::spm_int_t
+ @cextern spmIntConvert( n::spm_int_t, input::Ptr{Cint} )::Ptr{spm_int_t}
end
@cbindings libspm begin
@@ -179,7 +180,7 @@ end
end
@cbindings libspm begin
- @cextern spm2Dense( spm::Ptr{spmatrix_t} )::Cvoid
+ @cextern spm2Dense( spm::Ptr{spmatrix_t} )::Ptr{Cvoid}
end
@cbindings libspm begin
@@ -195,7 +196,7 @@ end
end
@cbindings libspm begin
- @cextern spmDofExtend( spm::Ptr{spmatrix_t}, type::Cint, dof::Cint )::spmatrix_t
+ @cextern spmDofExtend( spm::Ptr{spmatrix_t}, type::Cint, dof::Cint )::Ptr{spmatrix_t}
end
end #module
diff --git a/wrappers/julia/spm/src/spm_enums.jl.in b/wrappers/julia/spm/src/spm_enums.jl.in
index b57ec429aac2e746463a58ff2a00c938c0e33f3b..71e5bca12075445e8e2163a2885c897ad6aa200b 100644
--- a/wrappers/julia/spm/src/spm_enums.jl.in
+++ b/wrappers/julia/spm/src/spm_enums.jl.in
@@ -4,13 +4,13 @@
SPM julia wrapper to define enums and datatypes
- @copyright 2019-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2020-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
@version 6.0.0
@author Mathieu Faverge
@author Lebdaoui selmane
- @date 2020-06-18
+ @date 2020-07-15
This file has been automatically generated with gen_wrappers.py
diff --git a/wrappers/python/CMakeLists.txt b/wrappers/python/CMakeLists.txt
index 11a6bf87db5f82930214cd16bc19240200e20512..80bfcb7b4ea7555ce8cbdb228100f99ac509d787 100644
--- a/wrappers/python/CMakeLists.txt
+++ b/wrappers/python/CMakeLists.txt
@@ -17,9 +17,9 @@ else()
endif()
if (SPM_WITH_MPI)
- set(SPM_MPI_ENABLED 1)
+ set(SPM_PYTHON_MPI_ENABLED 1)
else()
- set(SPM_MPI_ENABLED 0)
+ set(SPM_PYTHON_MPI_ENABLED 0)
endif()
configure_file(
diff --git a/wrappers/python/spm/__spm__.py b/wrappers/python/spm/__spm__.py
index aa8b70a7592bea67baa6e9f637de391f18f6d674..421aee431a7e433c5cde465b20fd5a4f1c52cd12 100644
--- a/wrappers/python/spm/__spm__.py
+++ b/wrappers/python/spm/__spm__.py
@@ -4,14 +4,14 @@
SPM python wrapper
- @copyright 2017-2017 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2017-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
- @version 6.0.0
+ @version 6.0.3
@author Pierre Ramet
@author Mathieu Faverge
@author Louis Poirel
- @date 2017-05-04
+ @date 2020-07-15
This file has been automatically generated with gen_wrappers.py
diff --git a/wrappers/python/spm/enum.py.in b/wrappers/python/spm/enum.py.in
index 80b547f9a8ee03409720359b07feb8f2443b742b..988699d4b03ff5547f090f0542843f25d59a6c7a 100644
--- a/wrappers/python/spm/enum.py.in
+++ b/wrappers/python/spm/enum.py.in
@@ -4,14 +4,14 @@
SPM python wrapper to define enums and datatypes
- @copyright 2017-2017 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
+ @copyright 2017-2020 Bordeaux INP, CNRS (LaBRI UMR 5800), Inria,
Univ. Bordeaux. All rights reserved.
- @version 6.0.0
+ @version 6.0.3
@author Pierre Ramet
@author Mathieu Faverge
@author Louis Poirel
- @date 2017-05-04
+ @date 2020-07-15
This file has been automatically generated with gen_wrappers.py
@@ -21,7 +21,7 @@ import numpy as np
# Start with __ to prevent broadcast to file importing enum
__spm_int__ = @SPM_PYTHON_INTEGER@
-__spm_mpi_enabled__ = @SPM_MPI_ENABLED@
+__spm_mpi_enabled__ = @SPM_PYTHON_MPI_ENABLED@
class verbose:
Not = 0