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Commit bd82e0b8 authored by PRUVOST Florent's avatar PRUVOST Florent
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replace old FindPETSC by FindPETSc from https://gitlab.inria.fr/sed-bso/findPetsc

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modules/find/FindPETSC.cmake deleted 100644 → 0
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View file @ 323fa832
# - Try to find PETSc
# Once done this will define
#
# PETSC_FOUND - system has PETSc
# PETSC_INCLUDE_DIRS - include directories for PETSc
# PETSC_LIBRARY_DIRS - library directories for PETSc
# PETSC_LIBRARIES - libraries for PETSc
# PETSC_STATIC_LIBRARIES - libraries for PETSc (static linking, undefined if not required)
# PETSC_VERSION - version for PETSc
# PETSC_VERSION_MAJOR - First number in PETSC_VERSION
# PETSC_VERSION_MINOR - Second number in PETSC_VERSION
# PETSC_VERSION_SUBMINOR - Third number in PETSC_VERSION
# PETSC_INT_SIZE - sizeof(PetscInt)
#
#=============================================================================
# Copyright (C) 2010-2016 Garth N. Wells, Anders Logg and Johannes Ring
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# 1. Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# 2. Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in
# the documentation and/or other materials provided with the
# distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
# FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
# COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
# LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
# ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#=============================================================================
# Outline:
# 1. Get flags from PETSc-generated pkg-config file
# 2. Test compile and run program using shared library linking
# 3. If shared library linking fails, test with static library linking
# Load pkg-config module (provided by CMake)
find_package(PkgConfig REQUIRED)
# Find PETSc pkg-config file. Note: craypetsc_real is on Cray systems
set(ENV{PKG_CONFIG_PATH} "$ENV{CRAY_PETSC_PREFIX_DIR}/lib/pkgconfig:$ENV{PETSC_DIR}/$ENV{PETSC_ARCH}/lib/pkgconfig:$ENV{PETSC_DIR}/lib/pkgconfig:$ENV{PKG_CONFIG_PATH}")
pkg_search_module(PETSC craypetsc_real PETSc)
# Extract major, minor, etc from version string
if (PETSC_VERSION)
string(REPLACE "." ";" VERSION_LIST ${PETSC_VERSION})
list(GET VERSION_LIST 0 PETSC_VERSION_MAJOR)
list(GET VERSION_LIST 1 PETSC_VERSION_MINOR)
list(GET VERSION_LIST 2 PETSC_VERSION_SUBMINOR)
endif()
# Configure PETSc IMPORT (this involves creating an 'imported' target
# and attaching 'properties')
if (PETSC_FOUND AND NOT TARGET PETSC::petsc)
add_library(PETSC::petsc INTERFACE IMPORTED)
# Add include paths
set_property(TARGET PETSC::petsc PROPERTY
INTERFACE_INCLUDE_DIRECTORIES ${PETSC_INCLUDE_DIRS})
# Add libraries
unset(_libs)
foreach (lib ${PETSC_LIBRARIES})
find_library(LIB_${lib} NAMES ${lib} PATHS ${PETSC_LIBRARY_DIRS} NO_DEFAULT_PATH)
list(APPEND _libs ${LIB_${lib}})
endforeach()
set_property(TARGET PETSC::petsc PROPERTY INTERFACE_LINK_LIBRARIES "${_libs}")
endif()
# Configure PETSc 'static' IMPORT (this involves creating an
# 'imported' target and attaching 'properties')
if (PETSC_FOUND AND NOT TARGET PETSC::petsc_static)
add_library(PETSC::petsc_static INTERFACE IMPORTED)
# Add libraries (static)
unset(_libs)
foreach (lib ${PETSC_STATIC_LIBRARIES})
find_library(LIB_${lib} ${lib} HINTS ${PETSC_STATIC_LIBRARY_DIRS})
list(APPEND _libs ${LIB_${lib}})
endforeach()
set_property(TARGET PETSC::petsc_static PROPERTY INTERFACE_LINK_LIBRARIES "${_libs}")
endif()
# Attempt to build and run PETSc test program
if (DOLFIN_SKIP_BUILD_TESTS)
# Assume PETSc works
set(PETSC_TEST_RUNS TRUE)
elseif (PETSC_FOUND)
# Create PETSc test program
set(PETSC_TEST_LIB_CPP
"${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/petsc_test_lib.cpp")
file(WRITE ${PETSC_TEST_LIB_CPP} "
#include \"petscts.h\"
#include \"petsc.h\"
int main()
{
PetscErrorCode ierr;
TS ts;
int argc = 0;
char** argv = NULL;
ierr = PetscInitialize(&argc, &argv, PETSC_NULL, PETSC_NULL);CHKERRQ(ierr);
ierr = TSCreate(PETSC_COMM_WORLD,&ts);CHKERRQ(ierr);
ierr = TSSetFromOptions(ts);CHKERRQ(ierr);
ierr = TSDestroy(&ts);CHKERRQ(ierr);
ierr = PetscFinalize();CHKERRQ(ierr);
return 0;
}
")
# Add MPI variables if MPI has been found
if (MPI_C_FOUND)
set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${MPI_C_INCLUDE_PATH})
set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${MPI_C_LIBRARIES})
set(CMAKE_REQUIRED_FLAGS "${CMAKE_REQUIRED_FLAGS} ${MPI_C_COMPILE_FLAGS}")
endif()
# Try to run test program (shared linking)
try_run(
PETSC_TEST_LIB_EXITCODE
PETSC_TEST_LIB_COMPILED
${CMAKE_CURRENT_BINARY_DIR}
${PETSC_TEST_LIB_CPP}
CMAKE_FLAGS
"-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}"
"-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}"
LINK_LIBRARIES PETSC::petsc
COMPILE_OUTPUT_VARIABLE PETSC_TEST_LIB_COMPILE_OUTPUT
RUN_OUTPUT_VARIABLE PETSC_TEST_LIB_OUTPUT)
# Check program output
if (PETSC_TEST_LIB_COMPILED AND PETSC_TEST_LIB_EXITCODE EQUAL 0)
message(STATUS "Test PETSC_TEST_RUNS with shared library linking - Success")
set(PETSC_TEST_RUNS TRUE)
# Static libraries not required, so unset
set_property(TARGET PETSC::petsc_static PROPERTY INTERFACE_LINK_LIBRARIES)
else()
message(STATUS "Test PETSC_TEST_RUNS with shared library linking - Failed")
# Add MPI variables if MPI has been found
if (MPI_C_FOUND)
set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${MPI_C_INCLUDE_PATH})
set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${MPI_C_LIBRARIES})
set(CMAKE_REQUIRED_FLAGS "${CMAKE_REQUIRED_FLAGS} ${MPI_C_COMPILE_FLAGS}")
endif()
# Try to run test program (static linking)
try_run(
PETSC_TEST_LIB_EXITCODE
PETSC_TEST_LIB_COMPILED
${CMAKE_CURRENT_BINARY_DIR}
${PETSC_TEST_LIB_CPP}
CMAKE_FLAGS
"-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}"
"-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}"
LINK_LIBRARIES PETSC::petsc PETSC::petsc_static
COMPILE_OUTPUT_VARIABLE PETSC_TEST_LIB_COMPILE_OUTPUT
RUN_OUTPUT_VARIABLE PETSC_TEST_LIB_OUTPUT)
if (PETSC_TEST_LIB_COMPILED AND PETSC_TEST_LIB_EXITCODE EQUAL 0)
message(STATUS "Test PETSC_TEST_RUNS static linking - Success")
set(PETSC_TEST_RUNS TRUE)
else()
message(STATUS "Test PETSC_TEST_RUNS static linking - Failed")
set(PETSC_TEST_RUNS FALSE)
endif()
endif()
endif()
# Check sizeof(PetscInt)
if (PETSC_INCLUDE_DIRS)
include(CheckTypeSize)
set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${PETSC_INCLUDE_DIRS})
set(CMAKE_EXTRA_INCLUDE_FILES petscsys.h)
check_type_size("PetscInt" PETSC_INT_SIZE)
unset(CMAKE_EXTRA_INCLUDE_FILES)
unset(CMAKE_REQUIRED_INCLUDES)
endif()
# Standard package handling
include(FindPackageHandleStandardArgs)
if (PETSC_FOUND)
find_package_handle_standard_args(PETSc
REQUIRED_VARS PETSC_FOUND PETSC_TEST_RUNS VERSION_VAR PETSC_VERSION
FAIL_MESSAGE "PETSc could not be configured.")
else()
find_package_handle_standard_args(PETSc
REQUIRED_VARS PETSC_FOUND
FAIL_MESSAGE "PETSc could not be found. Be sure to set PETSC_DIR.")
endif()
modules/find/FindPETSc.cmake 0 → 100644
+ 204
− 0
View file @ bd82e0b8
#
# @copyright (c) 2018 Inria. All rights reserved.
#
# Marc Fuentes
# Florent Pruvost
#
# https://gitlab.inria.fr/sed-bso/findPetsc
#
# INPUT
# -----
#
# PETSc is not installed in a standard way on Unix systems so that
# this module requires hints to know where PETSc is installed. Please
# give the installation directory (contains ./include/petsc.h, ./lib/, etc):
# 1. by setting the PETSC_DIR variable
# a. as an environment variable, e.g.
# $ export PETSC_DIR=/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real
# b. or as an CMake variable, e.g.
# $ cmake .. -DPETSC_DIR==/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real
# 2. or by using the pkg-config mechanism, e.g.
# $ export PKG_CONFIG_PATH=/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/lib/pkgconfig:$PKG_CONFIG_PATH
#
# OUTPUT
# -------
# PETSC_INCLUDE_DIRS - the PETSc include directories
# PETSC_LIBRARIES - Link these to use PETSc
# PETSC_LIBRARY_DIRS - Link these to use PETSc
# PETSC_MPIEXEC - Executable for running MPI programs
#
# if pkg-config is used i.e. pkgconfig installed, PETSc.pc file path
# in the PKG_CONFIG_PATH environment variable and PETSC_DIR not set
# then the following variables are set (or empty)
#
# PETSC_VERSION ... version of the module
# PETSC_PREFIX ... prefix-directory of the module
# PETSC_INCLUDEDIR ... include-dir of the module
# PETSC_LIBDIR ... lib-dir of the module
#
# <PREFIX>_FOUND ... set to 1 if module(s) exist
# <PREFIX>_LIBRARIES ... only the libraries (w/o the '-l')
# <PREFIX>_LIBRARY_DIRS ... the paths of the libraries (w/o the '-L')
# <PREFIX>_LDFLAGS ... all required linker flags
# <PREFIX>_LDFLAGS_OTHER ... all other linker flags
# <PREFIX>_INCLUDE_DIRS ... the '-I' preprocessor flags (w/o the '-I')
# <PREFIX>_CFLAGS ... all required cflags
# <PREFIX>_CFLAGS_OTHER ... the other compiler flags
#
# <PREFIX> = PETSC for common case
# <PREFIX> = PETSC_STATIC for static linking
#
# find_package(PETSc [QUIET] [REQUIRED])
#
# Setting these changes the behavior of the search
# PETSC_DIR - directory in which PETSc is installed
# PETSC_ARCH - build architecture
# create a cmake cache variable
set(PETSC_DIR "" CACHE PATH "Installation directory of PETSC library")
if (NOT PETSc_FIND_QUIETLY AND NOT PETSC_DIR)
message(STATUS "A cache variable, namely PETSC_DIR, has been set
to specify a custom installation directory of PETSC")
endif()
# Use pkg-config to detect include/library dirs (if pkg-config is available)
# -------------------------------------------------------------------------------------
include(FindPkgConfig)
find_package(PkgConfig QUIET)
if( PKG_CONFIG_EXECUTABLE AND NOT PETSC_DIR )
pkg_search_module(PETSC PETSc)
if (NOT PETSc_FIND_QUIETLY)
if (PETSC_FOUND AND PETSC_LIBRARIES)
message(STATUS "Looking for PETSC - found using PkgConfig")
else()
message(STATUS "Looking for PETSC - not found using PkgConfig."
"\n Perhaps you should add the directory containing PETSc.pc to"
"\n the PKG_CONFIG_PATH environment variable.")
endif()
endif()
set(PETSC_DIR "${PETSC_PREFIX}")
endif()
# consider using the env. var. PETSC_DIR if not directly given through the CMake cache var.
if (NOT PETSC_DIR AND DEFINED ENV{PETSC_DIR})
set(PETSC_DIR "$ENV{PETSC_DIR}")
endif()
if (PETSC_DIR)
if (EXISTS ${PETSC_DIR})
if (EXISTS ${PETSC_DIR}/include/petsc.h)
if (NOT PETSc_FIND_QUIETLY)
message(STATUS "PETSC_DIR = ${PETSC_DIR} contains include/petsc.h")
endif()
else()
if (PETSc_FIND_REQUIRED)
message(FATAL_ERROR "include/petsc.h not found in PETSC_DIR = ${PETSC_DIR}")
endif()
endif()
else()
if (PETSc_FIND_REQUIRED)
message(FATAL_ERROR "PETSC_DIR defined, but ${PETSC_DIR} does not exist")
endif()
endif()
else()
if (PETSc_FIND_REQUIRED)
message(FATAL_ERROR "\
PETSc is not installed in a standard way on Unix systems so that
this module requires hints to know where PETSc is installed. Please
give the installation directory (contains ./include/petsc.h, ./lib/, etc):
1. by setting the PETSC_DIR variable
a. as an environment variable, e.g.
$ export PETSC_DIR=/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real
b. or as an CMake variable, e.g.
$ cmake .. -DPETSC_DIR==/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real
2. or by using the pkg-config mechanism, e.g.
$ export PKG_CONFIG_PATH=/usr/lib/petscdir/3.6.2/x86_64-linux-gnu-real/lib/pkgconfig:$PKG_CONFIG_PATH\
")
endif()
endif()
find_file(petscconf NAMES petscconf.h HINTS ${PETSC_DIR}/include)
if (petscconf)
if (NOT PETSc_FIND_QUIETLY)
message(STATUS "petscconf.h is located ad ${petscconf}")
endif()
else()
if (PETSc_FIND_REQUIRED)
message(FATAL_ERROR "\petscconf.h not found
we must find it into PETSC_DIR/include/")
endif()
endif()
if (NOT PETSC_ARCH)
if (petscconf)
file(READ ${petscconf} contents)
string(REGEX MATCHALL "#define *PETSC_ARCH *\".+\" *\n" foundArch ${contents})
string(REGEX REPLACE "#define *PETSC_ARCH *\"(.+)\" *\n" "\\1" archFromFile ${foundArch})
if (NOT PETSc_FIND_QUIETLY)
message(STATUS "PETSC_ARCH taken from petscconf.h = ${archFromFile}")
endif()
if(archFromFile)
set(PETSC_ARCH ${archFromFile})
endif(archFromFile)
endif(petscconf)
endif (NOT PETSC_ARCH)
if (NOT PETSc_FIND_QUIETLY)
message(STATUS "PETSC_ARCH = ${PETSC_ARCH}")
endif()
find_file(petscvariables NAMES petscvariables HINTS ${PETSC_DIR}/lib/petsc/conf/ ${PETSC_DIR}/conf)
if (petscvariables)
if (NOT PETSc_FIND_QUIETLY)
message(STATUS "petscvariables = ${petscvariables}")
endif()
else()
if (PETSc_FIND_REQUIRED)
message(FATAL_ERROR "petscvariables not found")
endif()
endif()
# function extracting the value of variable defined in a file under the form
# NAME_VAR = VARIABLE_CONTENT
# note that VARIABLE_CONTENT is assumed not to contain ";"
function(get_variable var filename out)
if (NOT EXISTS ${filename})
message(FATAL_ERROR "${filename} does not exist")
endif()
file(READ ${filename} contents)
string(REGEX REPLACE "\n" ";" contents "${contents}") # we divide line by lines because it did work without doing that
foreach(Line ${contents})
string(REGEX MATCHALL "^${var} = .*" foundVar ${Line})
if (foundVar)
string(REGEX REPLACE "^${var} = (.+)" "\\1" value ${foundVar})
break()
endif()
endforeach()
if(foundVar)
set(${out} "${value}" PARENT_SCOPE)
else()
message(FATAL_ERROR "${var} not found in ${filename}")
endif()
endfunction(get_variable)
get_variable(PETSC_WITH_EXTERNAL_LIB ${petscvariables} PETSC_LIBRARIES_RAW)
get_variable(MPIEXEC ${petscvariables} PETSC_MPIEXEC)
get_variable(PETSC_CC_INCLUDES ${petscvariables} PETSC_INCLUDES_RAW)
# extract include paths from petscvariables
string(REGEX REPLACE "-I" "" PETSC_INCLUDES_RAW ${PETSC_INCLUDES_RAW} )
string(REGEX REPLACE " " ";" PETSC_INCLUDE_DIRS ${PETSC_INCLUDES_RAW} )
# extract libraries from petscvariables
string(REGEX MATCHALL " -l([^ ]+) " foundLibs ${PETSC_LIBRARIES_RAW})
string(REGEX REPLACE " -l" "" PETSC_LIBRARIES ${foundLibs})
string(REGEX REPLACE " " ";" PETSC_LIBRARIES ${PETSC_LIBRARIES})
# extract library directories from petscvariables
string(REGEX MATCHALL " -L([^ ]+) " foundLibPaths ${PETSC_LIBRARIES_RAW})
string(REGEX REPLACE " -L" "" PETSC_LIBRARY_DIRS ${foundLibPaths})
string(REGEX REPLACE " " ";" PETSC_LIBRARY_DIRS ${PETSC_LIBRARY_DIRS})
include (FindPackageHandleStandardArgs)
find_package_handle_standard_args (PETSc
"PETSc could not be found. Be sure to set PETSC_DIR."
PETSC_MPIEXEC PETSC_INCLUDE_DIRS PETSC_LIBRARIES PETSC_LIBRARY_DIRS)
modules/find/tests/CMakeLists.txt
+ 1
− 1
View file @ bd82e0b8
...@@ -91,7 +91,7 @@ if (ENABLE_CTEST) ...@@ -91,7 +91,7 @@ if (ENABLE_CTEST)
PARMETIS PARMETIS
PARSEC PARSEC
PASTIX PASTIX
PETSC PETSc
PTSCOTCH PTSCOTCH
QUARK QUARK
SCALAPACK SCALAPACK
......
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