From 03abcbb73a87d7d27f8b704293a9e3555c5d994f Mon Sep 17 00:00:00 2001
From: PRUVOST Florent <florent.pruvost@inria.fr>
Date: Thu, 5 Nov 2020 09:43:49 +0100
Subject: [PATCH] Update the benchmark configuration to integrate Nmad
experiments and fix the guix environement
Remove extra line
---
.gitlab/bench_plafrim.yml | 26 +-
.gitlab/pages.yml | 11 +-
.gitmodules | 3 +
doc/orgmode/CMakeLists.txt | 12 +-
doc/orgmode/chapters/performances.org | 65 +
doc/orgmode/css/htmlize.css | 145 -
doc/orgmode/css/readtheorg.css | 1092 -----
doc/orgmode/css/rtd-full.css | 3910 -----------------
doc/orgmode/org-html-themes | 1 +
doc/orgmode/users_guide.org.in | 12 +-
tools/bench/jube/GenFigures.R | 175 +
tools/bench/jube/get_result.py | 58 +
.../plafrim/parameters/miriel/parameters.xml | 54 -
.../plafrim/parameters/sirocco/parameters.xml | 8 +-
tools/bench/plafrim/run.sh | 25 +-
tools/pages.sh | 61 +
16 files changed, 394 insertions(+), 5264 deletions(-)
create mode 100644 doc/orgmode/chapters/performances.org
delete mode 100644 doc/orgmode/css/htmlize.css
delete mode 100644 doc/orgmode/css/readtheorg.css
delete mode 100644 doc/orgmode/css/rtd-full.css
create mode 160000 doc/orgmode/org-html-themes
create mode 100644 tools/bench/jube/GenFigures.R
create mode 100755 tools/bench/jube/get_result.py
delete mode 100644 tools/bench/plafrim/parameters/miriel/parameters.xml
create mode 100755 tools/pages.sh
diff --git a/.gitlab/bench_plafrim.yml b/.gitlab/bench_plafrim.yml
index 4c9cb4394..4102f3214 100644
--- a/.gitlab/bench_plafrim.yml
+++ b/.gitlab/bench_plafrim.yml
@@ -7,36 +7,18 @@ bench_plafrim_bora_openmpi:
JUBE_ID: "000001"
extends: .bench_plafrim_common
-bench_plafrim_miriel_openmpi:
- variables:
- NODE: miriel
- MPI: openmpi
- SLURM_NP: 9
- JUBE_ID: "000002"
- extends: .bench_plafrim_common
-
-# Nmad segfaults for now, waiting for a stable version
-.bench_plafrim_bora_nmad:
+bench_plafrim_bora_nmad:
variables:
NODE: bora
MPI: nmad
SLURM_NP: 9
- JUBE_ID: "000003"
- extends: .bench_plafrim_common
-
-.bench_plafrim_miriel_nmad:
- variables:
- NODE: miriel
- MPI: nmad
- SLURM_NP: 9
- JUBE_ID: "000004"
+ JUBE_ID: "000002"
extends: .bench_plafrim_common
-# Chameleon+CUDA in Guix is not working yet
-.bench_plafrim_sirocco_openmpi:
+bench_plafrim_sirocco_openmpi:
variables:
NODE: sirocco
MPI: openmpi
SLURM_NP: 1
- JUBE_ID: "000005"
+ JUBE_ID: "000003"
extends: .bench_plafrim_common
\ No newline at end of file
diff --git a/.gitlab/pages.yml b/.gitlab/pages.yml
index 9373abd47..559a67642 100644
--- a/.gitlab/pages.yml
+++ b/.gitlab/pages.yml
@@ -11,14 +11,7 @@ pages:
variables:
VERSION: pages
script:
- - cd build-$VERSION
- - cmake .. -DCHAMELEON_ENABLE_DOC=ON
- - make doc -j5
- - mv doc/orgmode/ ../public/
- - ln -s ../public/users_guide.html ../public/index.html
- - mv doc/doxygen/out/html/ ../public/doxygen/
+ - ./tools/pages.sh
only:
- master@solverstack/chameleon
- - /^ci-.*$/
- except:
- - schedules
+ - /^ci.*$/
diff --git a/.gitmodules b/.gitmodules
index 86c9e98e1..75281289e 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -4,3 +4,6 @@
[submodule "hqr"]
path = hqr
url = https://gitlab.inria.fr/solverstack/hqr.git
+[submodule "doc/orgmode/org-html-themes"]
+ path = doc/orgmode/org-html-themes
+ url = https://github.com/fniessen/org-html-themes.git
diff --git a/doc/orgmode/CMakeLists.txt b/doc/orgmode/CMakeLists.txt
index c85509772..978d70d78 100644
--- a/doc/orgmode/CMakeLists.txt
+++ b/doc/orgmode/CMakeLists.txt
@@ -62,12 +62,12 @@ FIND_PROGRAM(TEX_COMPILER tex)
if(EMACS_COMPILER)
- # css directory is required for the html output
- add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/css
+ # org-html-themes directory is required for the html output
+ add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/org-html-themes
COMMAND ${CMAKE_COMMAND} -E copy_directory
- ${CMAKE_CURRENT_SOURCE_DIR}/css
- ${CMAKE_CURRENT_BINARY_DIR}/css
- DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/css)
+ ${CMAKE_CURRENT_SOURCE_DIR}/org-html-themes
+ ${CMAKE_CURRENT_BINARY_DIR}/org-html-themes
+ DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/org-html-themes)
# Add target
# ----------
@@ -80,7 +80,7 @@ if(EMACS_COMPILER)
--kill
DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/users_guide.org
${CMAKE_CURRENT_BINARY_DIR}/version.org
- ${CMAKE_CURRENT_BINARY_DIR}/css)
+ ${CMAKE_CURRENT_BINARY_DIR}/org-html-themes)
add_custom_command(OUTPUT users_guide.pdf
COMMAND ${EMACS_COMPILER}
ARGS ${CMAKE_CURRENT_BINARY_DIR}/users_guide.org
diff --git a/doc/orgmode/chapters/performances.org b/doc/orgmode/chapters/performances.org
new file mode 100644
index 000000000..860f52346
--- /dev/null
+++ b/doc/orgmode/chapters/performances.org
@@ -0,0 +1,65 @@
+# This file is part of the Chameleon User's Guide.
+# Copyright (C) 2020 Inria
+# See the file ../users_guide.org for copying conditions.
+
+Show performances on [[https://www.plafrim.fr/][PlaFRIM]] supercomputer.
+
+See [[https://www.plafrim.fr/hardware-documentation/][characteristics]] to get details about the hardwares.
+
+See script ~tools/bench/plafrim/run.sh~ to get details about the environment (Guix, Slurm,
+etc) and the build.
+
+Chameleon is run this way:
+#+begin_src sh
+mpiexec -np $nmpi $CHAMELEON_BUILD/testing/chameleon_${precision}testing -o ${algorithm} -P $p -t $nthr -g $ngpu -m $m -n $n -k $k -b $b
+#+end_src
+- runtime : *starpu*
+- precision : *s* or *d* for simple or double precision
+- algorithm : *gemm* or *potrf* or *geqrf_hqr*
+- nmpi = p x p
+- nthr : depends on the node
+- ngpu : depends on the node
+- m = n = k
+- b : depends on the node
+** bora (36 CPUs) nodes
+ - nmpi = *1*, *4*, *9*
+ - 2D block cyclic parameters : PxQ = 1x1, 2x2 and 3x3
+ - Number of threads (t) = *34*, one CPU being dedicated for the
+ scheduler and one other for MPI communications
+ - Number of GPUs = *0*
+ - Tile Size (b) = *280*
+*** CPU times
+ #+CAPTION: Performances in CPU time of GEMM, POTRF and QR on bora nodes
+ #+NAME: fig:chameleon_plafrim_bora_time_openmpi
+ #+ATTR_HTML: :align center :width 75%
+ [[file:chameleon_plafrim_bora_time_openmpi.png]]
+
+*** GFLOP/s
+ #+CAPTION: Performances in GFlop/s of GEMM, POTRF and QR on bora nodes
+ #+NAME: fig:chameleon_plafrim_bora_perf_openmpi
+ #+ATTR_HTML: :align center :width 75%
+ [[file:chameleon_plafrim_bora_perf_openmpi.png]]
+
+** sirocco [14-17] (32 CPUs + 2 GPUs V100) nodes
+ - nmpi = *1*
+ - 2D block cyclic parameters : PxQ = 1x1
+ - Number of threads (t) = *29*, one CPU being dedicated for the
+ scheduler and two others for the 2 GPUs
+ - Number of GPUs = *2*
+ - Tile Size (b) = *1600*
+ #+CAPTION: Performances in CPU time of GEMM, POTRF and QR on sirocco nodes
+ #+NAME: fig:chameleon_plafrim_sirocco
+ #+ATTR_HTML: :align center :width 75%
+ [[file:chameleon_plafrim_sirocco.png]]
+
+# *** CPU times
+# #+CAPTION: Performances in CPU time of GEMM, POTRF and QR on sirocco nodes
+# #+NAME: fig:chameleon_plafrim_sirocco_openmpi_time
+# #+ATTR_HTML: :align center :height 1024
+# [[file:chameleon_plafrim_sirocco_openmpi_time.png]]
+#
+# *** GFLOP/s
+# #+CAPTION: Performances in GFlop/s of GEMM, POTRF and QR on sirocco nodes
+# #+NAME: fig:chameleon_plafrim_sirocco_openmpi_perf
+# #+ATTR_HTML: :align center :height 1024
+# [[file:chameleon_plafrim_sirocco_openmpi_perf.png]]
diff --git a/doc/orgmode/css/htmlize.css b/doc/orgmode/css/htmlize.css
deleted file mode 100644
index 0b32a030a..000000000
--- a/doc/orgmode/css/htmlize.css
+++ /dev/null
@@ -1,145 +0,0 @@
-.org-bold { /* bold */ font-weight: bold; }
-.org-bold-italic { /* bold-italic */ font-weight: bold; font-style: italic; }
-.org-buffer-menu-buffer { /* buffer-menu-buffer */ font-weight: bold; }
-.org-builtin { /* font-lock-builtin-face */ color: #7a378b; }
-.org-button { /* button */ text-decoration: underline; }
-.org-calendar-today { /* calendar-today */ text-decoration: underline; }
-.org-change-log-acknowledgement { /* change-log-acknowledgement */ color: #b22222; }
-.org-change-log-conditionals { /* change-log-conditionals */ color: #a0522d; }
-.org-change-log-date { /* change-log-date */ color: #8b2252; }
-.org-change-log-email { /* change-log-email */ color: #a0522d; }
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-.org-change-log-function { /* change-log-function */ color: #a0522d; }
-.org-change-log-list { /* change-log-list */ color: #a020f0; }
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-.org-comint-highlight-prompt { /* comint-highlight-prompt */ color: #00008b; }
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diff --git a/doc/orgmode/css/readtheorg.css b/doc/orgmode/css/readtheorg.css
deleted file mode 100644
index a638c488b..000000000
--- a/doc/orgmode/css/readtheorg.css
+++ /dev/null
@@ -1,1092 +0,0 @@
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- -webkit-text-size-adjust:100%;
- font-size:100%;
- height:100%;
- overflow-x:hidden;
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-body{
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-#content{
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- padding:1.618em 3.236em;
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- margin:0px 0px 24px 0px;
- /* margin-left:24px; */
- padding: 6px 20px;
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-ul,ol,dl{
- line-height:24px;
- list-style-image:none;
- /* list-style:none; */
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-}
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- margin-left: 24px;
-}
-
-dd{
- margin:0;
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diff --git a/doc/orgmode/org-html-themes b/doc/orgmode/org-html-themes
new file mode 160000
index 000000000..7e4e2ec56
--- /dev/null
+++ b/doc/orgmode/org-html-themes
@@ -0,0 +1 @@
+Subproject commit 7e4e2ec56069dae3b40e2afdc0174bec368609d8
diff --git a/doc/orgmode/users_guide.org.in b/doc/orgmode/users_guide.org.in
index 39e2618e9..226ca624c 100644
--- a/doc/orgmode/users_guide.org.in
+++ b/doc/orgmode/users_guide.org.in
@@ -6,12 +6,12 @@
#+OPTIONS: TeX:t LaTeX:t skip:nil d:nil pri:nil tags:not-in-toc html-style:nil
#+BEAMER_THEME: Rochester
-#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="css/htmlize.css"/>
-#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="css/readtheorg.css"/>
-#+HTML_HEAD: <script src="https://ajax.googleapis.com/ajax/libs/jquery/2.1.3/jquery.min.js"></script>
-#+HTML_HEAD: <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.4/js/bootstrap.min.js"></script>
-#+HTML_HEAD: <script type="text/javascript" src="styles/lib/js/jquery.stickytableheaders.min.js"></script>
-#+HTML_HEAD: <script type="text/javascript" src="styles/readtheorg/js/readtheorg.js"></script>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="org-html-themes/styles/readtheorg/css/htmlize.css"/>
+#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="org-html-themes/styles/readtheorg/css/readtheorg.css"/>
+#+HTML_HEAD: <script type="text/javascript" src="org-html-themes/styles/readtheorg/js/jquery.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="org-html-themes/styles/readtheorg/js/bootstrap.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="org-html-themes/styles/readtheorg/js/jquery.stickytableheaders.min.js"></script>
+#+HTML_HEAD: <script type="text/javascript" src="org-html-themes/styles/readtheorg/js/readtheorg.js"></script>
#+INCLUDE: "./version.org"
diff --git a/tools/bench/jube/GenFigures.R b/tools/bench/jube/GenFigures.R
new file mode 100644
index 000000000..04fba1aa1
--- /dev/null
+++ b/tools/bench/jube/GenFigures.R
@@ -0,0 +1,175 @@
+library(ggplot2)
+library(plyr)
+library(reshape2)
+
+##
+## Load the file and clean up
+##
+df <- read.csv( "chameleon.csv", header=TRUE, sep=",", comment.char="#" )
+
+## Factorize the parameter for a better use
+df$algorithm = factor(df$algorithm)
+df$hostname = factor(df$hostname)
+df$mpivendor = factor(df$mpivendor)
+df$ngpu = factor(df$ngpu)
+df$nmpi = factor(df$nmpi)
+df$p = factor(df$p)
+df$q = factor(df$q)
+df$precision = factor(df$precision)
+
+## Get the hostname list
+hostnames <- ddply( df, c("hostname"), summarise, N = length(hostname) )$hostname
+
+## Get the mpivendor list
+mpinames <- ddply( df, c("mpivendor"), summarise, N = length(mpivendor) )$mpivendor
+
+##
+## Generate one figure for CPU times, and one figure for GFlop/s
+## mpi - string to caracterize the mpivendors included in df
+##
+gen_mpi_figure <- function( df, mpi )
+{
+ ## summary( df )
+ if ( nrow( df ) == 0 ) {
+ break;
+ }
+
+ df$nmpi = revalue( df$nmpi, c("1" = "1 MPI Process",
+ "4" = "4 MPI Processes (2x2)",
+ "9" = "9 MPI Processes (3x3)") )
+
+ df$algorithm = revalue( df$algorithm, c("gemm" = "Matrix Multiply (gemm)",
+ "geqrf_hqr" = "QR factorization (geqrf)",
+ "potrf" = "Cholesky factorization (potrf)") )
+
+ df$precision = revalue( df$precision, c("s" = "Single real (s)",
+ "d" = "Double real (d)" ) )
+
+ df$mpivendor <- revalue( df$mpivendor, c("openmpi" = "OpenMPI",
+ "nmad" = "NewMadeleine") )
+
+ ##
+ ## CPU time version
+ ##
+ p <- ggplot( df, aes( x=n, y=cputime, colour=mpivendor, linetype=precision ) )
+
+ p <- p + facet_grid( algorithm ~ nmpi, scales="free_x" )
+ p <- p + geom_line( )
+ p <- p + scale_colour_discrete( name=element_blank() ) ##name="Number of MPI processes" )
+ p <- p + scale_linetype_manual( values=c("solid", "dashed"),
+ name=element_blank() )## name="Arithmetic",
+
+ p <- p + theme( legend.position="bottom" )
+
+ p <- p + scale_y_log10( )
+ p <- p + ylab( "CPU Time (s)" )
+ p <- p + xlab( "Matrix size (M = N = K)" )
+
+ filename <- paste( "chameleon", "plafrim", h, "time", mpi, sep="_")
+ filename <- paste( filename, ".png", sep="" )
+
+ ggsave( filename, plot=p, width=10, height=10 )
+
+ ##
+ ## GFLop/s version
+ ##
+ p <- ggplot( df, aes( x=n, y=gflops, colour=mpivendor, linetype=precision ) )
+
+ p <- p + facet_grid( algorithm ~ nmpi, scales="free_x" )
+ p <- p + geom_line( )
+ p <- p + scale_colour_discrete( name=element_blank() ) ##name="Number of MPI processes" )
+ p <- p + scale_linetype_manual( values=c("solid", "dashed"),
+ name=element_blank() )## name="Arithmetic",
+
+ p <- p + theme( legend.position="bottom" )
+
+ p <- p + ylab( "GFlop/s" )
+ p <- p + xlab( "Matrix size (M = N = K)" )
+
+ filename <- paste( "chameleon", "plafrim", h, "perf", mpi, sep="_")
+ filename <- paste( filename, ".png", sep="" )
+
+ ggsave( filename, plot=p, width=10, height=10 )
+}
+
+##
+## Generate one figure with both CPU times and GFlop/s in facet for single node exeperiments
+##
+gen_shm_figure <- function( df )
+{
+ if ( nrow( df ) == 0 ) {
+ next;
+ }
+
+ df$algorithm = revalue( df$algorithm, c("gemm" = "Matrix Multiply (gemm)",
+ "geqrf_hqr" = "QR factorization (geqrf)",
+ "potrf" = "Cholesky factorization (potrf)") )
+
+ df$precision = revalue( df$precision, c("s" = "Single real (s)",
+ "d" = "Double real (d)" ) )
+
+ df$mpivendor <- revalue( df$mpivendor, c("openmpi" = "OpenMPI",
+ "nmad" = "NewMadeleine") )
+
+ df$type <- revalue( df$type, c("cputime" = "CPU Time (s)",
+ "gflops" = "GFlop/s") )
+
+ p <- ggplot( df, aes( x=n, y=value, colour=mpivendor, linetype=precision ) )
+
+ p <- p + facet_grid( type ~ algorithm, scales="free" )
+ p <- p + geom_line( )
+ p <- p + scale_linetype_manual( name=element_blank(),
+ values=c("solid", "dashed"))
+ p <- p + theme( legend.position="bottom" )
+
+ p <- p + xlab( "Matrix size (M = N = K)" )
+ p <- p + ylab( element_blank() )
+ p <- p + guides( colour=FALSE )
+
+ filename <- paste( "chameleon", "plafrim", h, sep="_")
+ filename <- paste( filename, ".png", sep="" )
+
+ ggsave( filename, plot=p, width=10, height=7 )
+}
+
+##
+## Generate the distributed figures
+##
+
+#Restict to bora
+hostnames <- c( 'bora' )
+
+for ( h in hostnames ) {
+ for ( mpi in mpinames ) {
+ ldf <- df[ (df$hostname == h) & (df$mpivendor == mpi),]
+ gen_mpi_figure( ldf, mpi )
+ }
+
+ ldf <- df[ (df$hostname == h),]
+ gen_mpi_figure( ldf, "both" )
+}
+
+##
+## Generate the distributed figures
+##
+
+## Restrict the list
+hostnames <- c( 'sirocco' )
+mpinames <- c( 'openmpi' )
+
+# Restructure the data to have cpu time and gflops on separated lines
+shmdf <- melt( df,
+ id.vars = c( "algorithm", "hostname", "k", "m", "mpivendor", "n",
+ "ngpu", "nmpi", "nthread", "p", "precision", "q" ),
+ variable.name = "type",
+ value.name = "value" )
+
+# loop over hostname and mpivendor
+for ( mpi in mpinames ) {
+ for ( h in hostnames ) {
+ ldf <- shmdf[ (shmdf$hostname == h) & (shmdf$mpivendor == mpi),]
+ gen_shm_figure( ldf )
+ }
+}
+
+
diff --git a/tools/bench/jube/get_result.py b/tools/bench/jube/get_result.py
new file mode 100755
index 000000000..a2bdbcb30
--- /dev/null
+++ b/tools/bench/jube/get_result.py
@@ -0,0 +1,58 @@
+#!/usr/bin/env python3
+
+import pandas
+import click
+import csv
+from elasticsearch import Elasticsearch
+
+@click.command()
+@click.option("-e", "--elastic-url", default="http://localhost:9200", help="elasticsearch instance url")
+@click.option("-t", "--team", required=True, help="team name")
+@click.option("-p", "--project", required=True, help="project name")
+@click.option("-c", "--commit", required=True, help="chameleon commit")
+def main(
+ elastic_url: str,
+ team: str,
+ project: str,
+ commit: str
+):
+ """Get a result from an elasticsearch database, e.g.
+ https://elasticsearch.bordeaux.inria.fr."""
+ es = Elasticsearch(elastic_url)
+ es_index = team + "-" + project + "_" + "perf"
+
+ search_param = {
+ "query": {
+ "bool": {
+ "must": [
+ {"term": {"Commit_sha_chameleon": {"value": commit}}}
+ ]
+ }
+ },
+ "size": 1000
+ }
+ response = es.search(index=es_index, body=search_param)
+ elastic_docs = response["hits"]["hits"]
+
+ docs = pandas.DataFrame()
+ for num, doc in enumerate(elastic_docs):
+
+ # get _source data dict from document
+ source_data = doc["_source"]
+
+ # get _id from document
+ _id = doc["_id"]
+
+ # create a Series object from doc dict object
+ doc_data = pandas.Series(source_data, name = _id)
+ doc_data = doc_data.drop(labels=['Commit_date_chameleon', 'Commit_sha_chameleon', 'Commit_sha_guix', 'Commit_sha_guix_hpc', 'Commit_sha_guix_hpcnonfree'])
+
+ # append the Series object to the DataFrame object
+ docs = docs.append(doc_data)
+
+ docs = docs.astype({"Nmpi": int, "Nthread": int, "Ngpu": int, "P": int, "Q": int, "M": int, "N": int, "K": int})
+ docs = docs.rename(columns=str.lower)
+ docs.to_csv("chameleon.csv", ",", index=False)
+
+if __name__ == "__main__":
+ main()
diff --git a/tools/bench/plafrim/parameters/miriel/parameters.xml b/tools/bench/plafrim/parameters/miriel/parameters.xml
deleted file mode 100644
index 54c33d13a..000000000
--- a/tools/bench/plafrim/parameters/miriel/parameters.xml
+++ /dev/null
@@ -1,54 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<jube>
- <parameterset name="param_gemm">
- <parameter name="hostname" type="string">miriel</parameter>
- <parameter name="algorithm" type="string">gemm</parameter>
- <parameter name="precision" type="string">s, d</parameter>
- <parameter name="i_pq" type="int" >0, 1, 2</parameter>
- <parameter name="p" mode="python" type="int" >[1, 2, 3][$i_pq]</parameter>
- <parameter name="q" mode="python" type="int" >[1, 2, 3][$i_pq]</parameter>
- <parameter name="nmpi" mode="python" type="int" >[1, 4, 9][$i_pq]</parameter>
- <parameter name="nthr" type="int" >22</parameter>
- <parameter name="ngpu" type="int" >0</parameter>
- <parameter name="b" type="int" >320</parameter>
- <parameter name="i_mn" type="int" >0, 1, 2, 3, 4, 5</parameter>
- <parameter name="m" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*2*${b}, ${nmpi}*4*${b}, ${nmpi}*8*${b}, ${nmpi}*16*${b}, ${nmpi}*24*${b}][$i_mn]</parameter>
- <parameter name="k" mode="python" type="int" >${m}</parameter>
- <parameter name="n" mode="python" type="int" >${m}</parameter>
- <parameter name="command" type="string">mpiexec $MPI_OPTIONS -np $nmpi $CHAMELEON_BUILD/testing/chameleon_${precision}testing -o ${algorithm} -P $p -t $nthr -g $ngpu -m $m -n $n -k $k -b $b</parameter>
- </parameterset>
- <parameterset name="param_potrf">
- <parameter name="hostname" type="string">miriel</parameter>
- <parameter name="algorithm" type="string">potrf</parameter>
- <parameter name="precision" type="string">s, d</parameter>
- <parameter name="i_pq" type="int" >0, 1, 2</parameter>
- <parameter name="p" mode="python" type="int" >[1, 2, 3][$i_pq]</parameter>
- <parameter name="q" mode="python" type="int" >[1, 2, 3][$i_pq]</parameter>
- <parameter name="nmpi" mode="python" type="int" >[1, 4, 9][$i_pq]</parameter>
- <parameter name="nthr" type="int" >22</parameter>
- <parameter name="ngpu" type="int" >0</parameter>
- <parameter name="b" type="int" >320</parameter>
- <parameter name="i_mn" type="int" >0, 1, 2, 3, 4, 5</parameter>
- <parameter name="m" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*2*${b}, ${nmpi}*4*${b}, ${nmpi}*8*${b}, ${nmpi}*16*${b}, ${nmpi}*24*${b}][$i_mn]</parameter>
- <parameter name="n" mode="python" type="int" >${m}</parameter>
- <parameter name="k" type="int" >1</parameter>
- <parameter name="command" type="string">mpiexec $MPI_OPTIONS -np $nmpi $CHAMELEON_BUILD/testing/chameleon_${precision}testing -o ${algorithm} -P $p -t $nthr -g $ngpu -m $m -n $n -k $k -b $b</parameter>
- </parameterset>
- <parameterset name="param_geqrf">
- <parameter name="hostname" type="string">miriel</parameter>
- <parameter name="algorithm" type="string">geqrf_hqr</parameter>
- <parameter name="precision" type="string">s, d</parameter>
- <parameter name="i_pq" type="int" >0, 1, 2</parameter>
- <parameter name="p" mode="python" type="int" >[1, 2, 3][$i_pq]</parameter>
- <parameter name="q" mode="python" type="int" >[1, 2, 3][$i_pq]</parameter>
- <parameter name="nmpi" mode="python" type="int" >[1, 4, 9][$i_pq]</parameter>
- <parameter name="nthr" type="int" >22</parameter>
- <parameter name="ngpu" type="int" >0</parameter>
- <parameter name="b" type="int" >320</parameter>
- <parameter name="i_mn" type="int" >0, 1, 2, 3, 4, 5</parameter>
- <parameter name="m" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*2*${b}, ${nmpi}*4*${b}, ${nmpi}*8*${b}, ${nmpi}*16*${b}, ${nmpi}*24*${b}][$i_mn]</parameter>
- <parameter name="n" mode="python" type="int" >${m}</parameter>
- <parameter name="k" type="int" >1</parameter>
- <parameter name="command" type="string">mpiexec $MPI_OPTIONS -np $nmpi $CHAMELEON_BUILD/testing/chameleon_${precision}testing -o ${algorithm} -P $p -t $nthr -g $ngpu -m $m -n $n -k $k -b $b</parameter>
- </parameterset>
-</jube>
diff --git a/tools/bench/plafrim/parameters/sirocco/parameters.xml b/tools/bench/plafrim/parameters/sirocco/parameters.xml
index c5e869ea3..3f04ebc61 100644
--- a/tools/bench/plafrim/parameters/sirocco/parameters.xml
+++ b/tools/bench/plafrim/parameters/sirocco/parameters.xml
@@ -11,10 +11,10 @@
<parameter name="nthr" type="int" >29</parameter>
<parameter name="ngpu" type="int" >2</parameter>
<parameter name="b" type="int" >1600</parameter>
- <parameter name="i_mn" type="int" >0, 1, 2, 3, 4</parameter>
- <parameter name="m" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*5*${b}, ${nmpi}*10*${b}, ${nmpi}*20*${b}, ${nmpi}*40*${b}][$i_mn]</parameter>
- <parameter name="k" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*5*${b}, ${nmpi}*10*${b}, ${nmpi}*20*${b}, ${nmpi}*40*${b}][$i_mn]</parameter>
- <parameter name="n" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*5*${b}, ${nmpi}*10*${b}, ${nmpi}*20*${b}, ${nmpi}*40*${b}][$i_mn]</parameter>
+ <parameter name="i_mn" type="int" >0, 1, 2, 3, 4, 5</parameter>
+ <parameter name="m" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*2*${b}, ${nmpi}*4*${b}, ${nmpi}*8*${b}, ${nmpi}*16*${b}, ${nmpi}*32*${b}][$i_mn]</parameter>
+ <parameter name="k" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*2*${b}, ${nmpi}*4*${b}, ${nmpi}*8*${b}, ${nmpi}*16*${b}, ${nmpi}*32*${b}][$i_mn]</parameter>
+ <parameter name="n" mode="python" type="int" >[${nmpi}*${b}, ${nmpi}*2*${b}, ${nmpi}*4*${b}, ${nmpi}*8*${b}, ${nmpi}*16*${b}, ${nmpi}*32*${b}][$i_mn]</parameter>
<parameter name="command" type="string">mpiexec $MPI_OPTIONS -np $nmpi $CHAMELEON_BUILD/testing/chameleon_${precision}testing -o ${algorithm} -P $p -t $nthr -g $ngpu -m $m -n $n -k $k -b $b</parameter>
</parameterset>
<parameterset name="param_potrf">
diff --git a/tools/bench/plafrim/run.sh b/tools/bench/plafrim/run.sh
index 89a135e0d..6ba4eaeb7 100755
--- a/tools/bench/plafrim/run.sh
+++ b/tools/bench/plafrim/run.sh
@@ -2,7 +2,7 @@
echo "######################### Chameleon benchmarks #########################"
-set -x
+set -x
# to avoid a lock during fetching chameleon branch in parallel
export XDG_CACHE_HOME=/tmp/guix-$$
@@ -11,27 +11,19 @@ export XDG_CACHE_HOME=/tmp/guix-$$
guix describe --format=json > guix.json
# define env var depending on the node type
-export STARPU_SILENT=1
-export STARPU_CALIBRATE=0
-export STARPU_COMM_STATS=1
-export STARPU_WORKER_STATS=1
if [ $NODE = "bora" ]
then
export SLURM_CONSTRAINTS="bora,omnipath"
export CHAMELEON_BUILD_OPTIONS="-DCHAMELEON_USE_MPI=ON -DCMAKE_BUILD_TYPE=Release"
export STARPU_HOSTNAME="bora"
-elif [ $NODE = "miriel" ]
-then
- export SLURM_CONSTRAINTS="miriel,infinipath"
- export CHAMELEON_BUILD_OPTIONS="-DCHAMELEON_USE_MPI=ON -DCMAKE_BUILD_TYPE=Release"
- export STARPU_HOSTNAME="miriel"
elif [ $NODE = "sirocco" ]
then
export SLURM_CONSTRAINTS="sirocco,omnipath,v100"
export CHAMELEON_BUILD_OPTIONS="-DCHAMELEON_USE_MPI=ON -DCHAMELEON_USE_CUDA=ON -DCMAKE_BUILD_TYPE=Release"
export STARPU_HOSTNAME="sirocco"
+ export LD_PRELOAD="/usr/lib64/libcuda.so /usr/lib64/libnvidia-fatbinaryloader.so.440.33.01"
else
- echo "$0: Please set the NODE environnement variable to bora or miriel or sirocco."
+ echo "$0: Please set the NODE environnement variable to bora or sirocco."
exit -1
fi
@@ -41,25 +33,25 @@ if [ $NODE = "sirocco" ]
then
GUIX_ENV="chameleon-cuda --with-input=openblas=mkl"
fi
+export MPI_OPTIONS=""
if [ $MPI = "openmpi" ]
then
- export MPI_OPTIONS="--map-by ppr:1:node:pe=36"
- if [ $NODE = "miriel" ]
+ if [ $NODE = "bora" ]
then
- export MPI_OPTIONS="--mca mtl psm --map-by ppr:1:node:pe=24"
+ export MPI_OPTIONS="--map-by ppr:1:node:pe=36"
fi
GUIX_ENV_MPI=""
GUIX_ADHOC_MPI="openssh openmpi"
elif [ $MPI = "nmad" ]
then
export MPI_OPTIONS="-DPIOM_DEDICATED=1 -DPIOM_DEDICATED_WAIT=1"
- GUIX_ENV_MPI="--with-input=openmpi=nmad"
+ GUIX_ENV_MPI="--with-input=openmpi=nmad --with-branch=starpu=starpu-1.3"
GUIX_ADHOC_MPI="which gzip zlib tar inetutils util-linux procps openssh nmad"
else
echo "$0: Please set the MPI environnement variable to openmpi or nmad."
exit -1
fi
-GUIX_ADHOC="slurm jube python python-click python-gitpython python-elasticsearch python-certifi sed coreutils grep gawk perl"
+GUIX_ADHOC="coreutils gawk grep jube perl python python-click python-certifi python-elasticsearch python-gitpython python-matplotlib python-pandas python-seaborn r-ggplot2 r-plyr r-reshape2 sed slurm"
GUIX_RULE="$GUIX_ENV $GUIX_ENV_MPI --ad-hoc $GUIX_ADHOC $GUIX_ADHOC_MPI"
# Submit jobs
@@ -68,6 +60,7 @@ GUIX_RULE="$GUIX_ENV $GUIX_ENV_MPI --ad-hoc $GUIX_ADHOC $GUIX_ADHOC_MPI"
exec guix environment --pure \
--preserve=PLATFORM \
--preserve=NODE \
+ --preserve=LD_PRELOAD \
--preserve=^CI \
--preserve=^SLURM \
--preserve=^JUBE \
diff --git a/tools/pages.sh b/tools/pages.sh
new file mode 100755
index 000000000..f7be64c65
--- /dev/null
+++ b/tools/pages.sh
@@ -0,0 +1,61 @@
+#!/usr/bin/env bash
+
+CHAMELEON_SRC_DIR=${CHAMELEON_SRC_DIR:-$PWD}
+
+mkdir tmp_fig
+cd tmp_fig
+
+## need to generate figures from last benchmarks
+# get the most recent chameleon commit date for which benchs have been performed
+commit_sha=`curl -X GET "https://elasticsearch.bordeaux.inria.fr/hiepacs-chameleon_perf/_search?pretty" -H 'Content-Type: application/json' -d'
+{
+ "query": { "match_all": {} },
+ "sort": [
+ { "Commit_date_chameleon": "desc" }
+ ],
+ "size": 1
+}
+' | grep "Commit_sha_chameleon" | awk '{ print $3" "$4}' |sed -e "s#,##g" |sed -e "s#\"##g" |sed -e "s# ##g"`
+echo $commit_sha
+
+# generate the csv file from elasticsearch for the given chameleon commit
+python3 ${CHAMELEON_SRC_DIR}/tools/bench/jube/get_result.py -e https://elasticsearch.bordeaux.inria.fr -t hiepacs -p chameleon -c $commit_sha
+
+# generate the figures
+Rscript ${CHAMELEON_SRC_DIR}/tools/bench/jube/GenFigures.R
+
+# add the performance chapter to the doc. we need the performances files to add
+# this chapter that are not commited in the sources so that this chapter is not
+# here by default
+cat >> ${CHAMELEON_SRC_DIR}/doc/orgmode/users_guide.org.in <<EOF
+* Chameleon Performances on PlaFRIM
+Chameleon commit: *$commit_sha*.
+#+INCLUDE: @CMAKE_CURRENT_SOURCE_DIR@/chapters/performances.org
+EOF
+
+cd ..
+
+## Build the doc
+VERSION=${VERSION:-pages}
+mkdir -p build-$VERSION
+cd build-$VERSION
+
+cmake $CHAMELEON_SRC_DIR -DCHAMELEON_ENABLE_DOC=ON
+make doc -j5
+
+cd ..
+mv build-$VERSION/doc/orgmode public/
+mv build-$VERSION/doc/doxygen/out/html public/doxygen
+mv tmp_fig/*.png public/
+
+cd public/
+if [ -f users_guide.html ]
+then
+ ln -sfn users_guide.html index.html
+else
+ echo -e "ERROR: missing users_guide.html file"
+ exit 1
+fi
+
+# Change the width of the page in the CSS file
+sed -i -e "s#max-width:800px#max-width:1800px#" org-html-themes/styles/readtheorg/css/readtheorg.css
--
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