Add script to check one algorithm

Utils/scripts/checkTaskAlgo.slurm

+#!/usr/bin/env bash
+#SBATCH --job-name=OpenMPAlgo_perf
+#SBATCH  --mail-user=olivier.coulaud@inria.fr
+#SBATCH -m a
+#
+#SBATCH -p court
+#SBATCH --time=2:00:00
+#SBATCH --nodes=1
+#SBATCH --ntasks-per-node=24
+#
+#
+# Task algorithm Improvement
+#
+METH='none'
+data_dir=/projets/scalfmm/data/openmpImprovements ;
+project_dir=$HOME/Dev/src/ScalFMM/scalfmm ;
+
+#
+# PlaFRIM environment
+#
+source $HOME/Config/bashrc.bash
+#
+EXEC="Utils/Release/ChebyshevInterpolationCmpAlgo"
+FILEPERF="RES-Cheb-openmp"
+OPTION="-show-info -show-compile"
+#
+DATE=`date +%y-%m-%d-%H%M`
+echo $DATE
+#
+cd $project_dir/BuildIntel2016
+#
+#   INTEL
+#
+# module add compiler/gcc/5.1.0 compiler/intel/64/2016_beta
+# cd $project_dir/BuildIntel2016
+#
+#   GCC
+#
+module add compiler/gcc/5.1.0 intel/mkl/64/11.2/2015.3.187  
+cd $project_dir/BuildGCC51
+#
+# For eztrace
+#
+module add mpi/openmpi/gcc/1.8.4 trace/eztrace/1.0
+module li
+#
+#
+PER_SIZE=`cat /proc/cpuinfo |grep processor |wc -l`
+PER_SIZE="4 8 12 16 20 24"
+HOST=`hostname`
+NBTEST=3  # 0..NBTEST
+DISTRIB=(unitcube unitsphere prolate plummer)
+DEPTH=(6           7           9            8)
+#ALGO=(basic balanced task sectiontask)
+ALGO=(task)
+#
+pwd
+export OMP_PROC_BIND=true
+export KMP_AFFINITY=scatter
+NUM=`git rev-list HEAD --count`
+echo   $DISTRIB
+REP=${DATE}- ${METH}
+mkdir  ${REP}
+for dist in `seq 0 $NBTEST`;
+do
+    echo "Distribution:  " $dist ${DISTRIB[$dist]}   "  depth octree "  ${DEPTH[$dist]}
+    FILE=${data_dir}/${DISTRIB[$dist]}-1M-ref.bfma
+    FILEGNU=${DISTRIB[$dist]}.txt
+    mkdir   ${REP}/${DISTRIB[$dist]} 
+    touch  $FILEGNU
+    #
+    #    Loop on algorithm 
+    for a in `seq 0 3`;
+    do 
+echo  "# Core GlabalTIME P2PTIME M2LTIME  MALLOC   FREE MEMUse ENERGY PotentialError ForceError"> $FILEPERF-${DISTRIB[$dist]}-${ALGO[$a]}.out
+	#  One computation
+	for l in $PER_SIZE ;
+	do
+	    OUTPUT=${FILEPERF}-${DISTRIB[$dist]}-${ALGO[$a]}-${l}.out
+	    echo "ScalFMM git version: " $NUM > $OUTPUT
+	    echo "Running  on " ${l} " threads with algo "   ${ALGO[$a]}
+	    $EXEC ${OPTION} -f $FILE  -depth  ${DEPTH[$dist]}  -subdepth 4  -t $l  -cmp  -algo ${ALGO[$a]}>>  $OUTPUT
+	    #
+	    eztrace_stats /tmp/coulaud_eztrace_log_rank_1 > TRACE
+	    TIME=`grep "@Algorithm"  $OUTPUT | awk '{print $4}'`
+	    TIMEP2P=`grep "P2P"  $OUTPUT | grep "second" | awk '{print $4}'`
+	    TIMEM2L=`grep "M2L"  $OUTPUT | grep "second" | awk '{print $2}'`
+	    Energy=`grep "Energy"  $OUTPUT | awk '{print $3}'`
+	    P1=`grep " Potential "  $OUTPUT | awk '{print $7}'`
+	    P2=`grep " F "  $OUTPUT | awk '{print $7}'`
+	    MALLOC=`grep Total  TRACE | grep malloc | awk '{print $2}'`
+	    FREE=`grep Total  TRACE | grep malloc | awk '{print $7}'`
+	    MEM=`grep Total  TRACE | grep malloc | awk '{print $15}'`
+	    echo " " $l "   " $TIME "  " $TIMEP2P "  " $TIMEM2L "  " $MALLOC "  " $FREE "  " $MEM "  " $Energy "     " $P1  "  " $P2
+	    echo " " $l "   " $TIME "  " $TIMEP2P "  " $TIMEM2L "  " $MALLOC "  " $FREE "  " $MEM "  "$Energy "     " $P1  "  " $P2  >>  $FILEPERF-${DISTRIB[$dist]}-${ALGO[$a]}.out
+	    mv  $OUTPUT   ${REP}/${DISTRIB[$dist]}
+	    mv /tmp/coulaud_eztrace_log_rank_1   ${REP}/${DISTRIB[$dist]}/trace-${DISTRIB[$dist]}-${ALGO[$a]}-${l}
+
+	    rm TRACE
+	done
+	echo  ${DISTRIB[$dist]}/$FILEPERF-${DISTRIB[$dist]}-${ALGO[$a]}.out  >> $FILEGNU
+	mv $FILEPERF-${DISTRIB[$dist]}-${ALGO[$a]}.out  ${REP}/${DISTRIB[$dist]}
+    echo "----------------------------------------------------------"
+    done
+    echo "---------------------------- END ALGO ---------------------------------------"
+   mv   $FILEGNU  ${REP}
+done
+echo " ----------------------   FINISH -------------------------------"