Sorry forgot to add the Src dir!

Here it the new src dir with some minor changes in CMake files.

git-svn-id: svn+ssh://scm.gforge.inria.fr/svn/scalfmm/scalfmm/trunk@61 2616d619-271b-44dc-8df4-d4a8f33a7222

CMakeLists.txt

@@ -34,6 +34,7 @@ endif()
 # Compile option
 ADD_DEFINITIONS(-O2 -Wall -Wshadow -Wpointer-arith -Wcast-qual)
 
+
 CONFIGURE_FILE( ${CMAKE_SOURCE_DIR}/Src/ScalFmmConfig.h.cmake 
 		${CMAKE_BINARY_DIR}/Src/ScalFmmConfig.h  )
 

Src/CMakeLists.txt

+cmake_minimum_required(VERSION 2.6)
+
+# Configuration du projet
+project(Lib_scalfmm)
+set(LIBRARY_OUTPUT_PATH ../lib/${CMAKE_BUILD_TYPE})
+
+# Searching all cpp file
+file(
+	GLOB_RECURSE
+	source_lib_files
+	./*.cpp
+)
+
+# Adding cpp files to project
+add_library(
+	scalfmm
+	STATIC
+	${source_lib_files}
+)
+
+# Adding the entire project dir as an include dir
+INCLUDE_DIRECTORIES(
+     ${CMAKE_BINARY_DIR}/Sources 
+)
+

Src/Components/FAbstractCell.hpp

+#ifndef FABSTRACTCELL_HPP
+#define FABSTRACTCELL_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FAbstractCell
+* @brief
+* Please read the license
+*
+* This class define the method that every cell class
+* has to implement.
+*
+* In fact FOctree & FFmmAlgorithm need this function to be implemented.
+* But you cannot use this interface with the extension (as an example :
+* because the compiler will faill to know if getMortonIndex is coming
+* from this interface or from the extension)
+*
+* @warning Inherite from this class when implement a specific cell type
+*/
+class FAbstractCell{
+public:	
+	/** Default destructor */
+        virtual ~FAbstractCell(){
+	}
+
+	/**
+        * Must be implemented by each user Cell class
+	* @return the position of the current cell
+	*/
+        virtual MortonIndex getMortonIndex() const = 0;
+
+
+        /**
+        * Must be implemented by each user Cell class
+        * @param inIndex the position of the current cell
+        */
+        virtual void setMortonIndex(const MortonIndex inIndex) = 0;
+
+        /**
+        * Must be implemented by each user Cell class
+        * @param inPosition the position of the current cell
+        */
+        virtual void setPosition(const F3DPosition& inPosition) = 0;
+
+        /** Because the system can run in Tsm mode
+          * a cell has to express if it has sources
+          * @return true if there are sources particles inside
+          */
+        virtual bool hasSrcChild() const = 0;
+
+        /** Because the system can run in Tsm mode
+          * a cell has to express if it has targets
+          * @return true if there are targets particles inside
+          */
+        virtual bool hasTargetsChild() const = 0;
+
+        /**
+          * This function make the cell containing sources
+          */
+        virtual void setSrcChildTrue() = 0;
+
+        /**
+          * This function make the cell containing targets
+          */
+        virtual void setTargetsChildTrue() = 0;
+};
+
+
+#endif //FABSTRACTCELL_HPP
+
+// [--LICENSE--]

Src/Components/FAbstractKernels.hpp

+#ifndef FABSTRACTKERNELS_HPP
+#define FABSTRACTKERNELS_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+#include "../Utils/FGlobal.hpp"
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FAbstractKernels
+* @brief
+* Please read the license
+*
+* If you want to create you own kernels you have to inherit from this class.
+*/
+template< class ParticleClass, class CellClass, int TreeHeight>
+class FAbstractKernels{
+public:
+    /** Default destructor */
+    virtual ~FAbstractKernels(){
+    }
+
+    /**
+        * Init the Kernels
+        * This function is called just before to start the computation
+        */
+    virtual void init(){}
+
+    /**
+        * P2M
+        * particles to multipole
+        * @param pole the multipole to fill using the particles
+        * @param particles the particles from the same spacial boxe
+        */
+    virtual void P2M(CellClass* const pole, const FList<ParticleClass*>* const particles) = 0;
+
+    /**
+        * M2M
+        * Multipole to multipole
+        * @param pole the father (the boxe that contains other ones)
+        * @param child the boxe to take values from
+        * @param the current computation level
+        * the child array has a size of 8 elements (address if exists or 0 otherwise).
+        * You must test if a pointer is 0 to know if an element exists inside this array
+        */
+    virtual void M2M(CellClass* const FRestrict pole, const CellClass*const FRestrict *const FRestrict child, const int inLevel) = 0;
+
+    /**
+        * M2L
+        * Multipole to local
+        * @param local the element to fill using distant neighbors
+        * @param distantNeighbors is an array containing fathers's direct neighbors's child - direct neigbors
+        * @param size the number of neighbors
+        * @param inLevel the current level of the computation
+        */
+    virtual void M2L(CellClass* const FRestrict local, const CellClass*const FRestrict  *const FRestrict distantNeighbors, const int size, const int inLevel) = 0;
+
+    /**
+        * L2L
+        * Local to local
+        * @param the father to take value from
+        * @param the child to downward values (child may have already been impacted by M2L)
+        * @param level the current level of computation
+        * the child array has a size of 8 elements (address if exists or 0 otherwise).
+        * You must test if a pointer is 0 to know if an element exists inside this array
+        */
+    virtual void L2L(const CellClass* const FRestrict local, CellClass* FRestrict * const FRestrict child, const int inLevel) = 0;
+
+    /**
+        * L2P
+        * Local to particles
+        * @param local the leaf element (smaller boxe local element)
+        * @param particles the list of particles inside this boxe
+        */
+    virtual void L2P(const CellClass* const local, FList<ParticleClass*>* const particles) = 0;
+
+    /**
+        * P2P
+        * Particles to particles
+        * @param targets current boxe targets particles
+        * @param sources current boxe sources particles
+        * @param directNeighborsParticles the particles from direct neighbors (this is an array of list)
+        * @param size the number of direct neighbors (the size of the array directNeighborsParticles)
+        */
+    virtual void P2P(FList<ParticleClass*>* const FRestrict targets, const FList<ParticleClass*>* const FRestrict sources,
+                     FList<ParticleClass*>*const FRestrict  *const FRestrict directNeighborsParticles, const int size) = 0;
+};
+
+
+#endif //FABSTRACTKERNELS_HPP
+
+// [--LICENSE--]

Src/Components/FAbstractLeaf.hpp

+#ifndef FABSTRACTLEAF_HPP
+#define FABSTRACTLEAF_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FAbstractLeaf
+* @brief
+* Please read the license
+* This class is used to enable the use of typed particles
+* (source XOR target) or simple system (source AND target)
+*/
+template< class ParticleClass >
+class FAbstractLeaf {
+public:
+    /** Default destructor */
+    virtual ~FAbstractLeaf(){
+    }
+
+    /**
+        * To add a new particle in the leaf
+        * @param particle the new particle
+        * Depending on the system to use the class that inherit
+        * this interface can sort the particle as they like.
+        */
+    virtual void push(ParticleClass* const particle) = 0;
+
+    /**
+        * To get all the sources in a leaf
+        * @return a pointer to the list of particles that are sources
+        * Depending on the system to use the class that inherit
+        * this interface can sort the particle as they like.
+        */
+    virtual FList<ParticleClass*>* getSrc() = 0;
+
+    /**
+        * To get all the target in a leaf
+        * @return a pointer to the list of particles that are targets
+        * Depending on the system to use the class that inherit
+        * this interface can sort the particle as they like.
+        */
+    virtual FList<ParticleClass*>* getTargets() = 0;
+
+};
+
+
+#endif //FABSTRACTLEAF_HPP
+
+// [--LICENSE--]

Src/Components/FAbstractParticle.hpp

+#ifndef FABSTRACTPARTICLE_HPP
+#define FABSTRACTPARTICLE_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+/* forward declaration to avoid include */
+class F3DPosition;
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FAbstractBody
+* @brief
+* Please read the license
+*
+* This class define the method that every particle class
+* has to implement.
+*
+* In fact FOctree & FFmmAlgorithm need this function to be implemented.
+* But you cannot use this interface with the extension (as an example :
+* because the compiler will faill to know if getPosition is coming
+* from this interface or from the extension)
+*
+*
+* @warning Inherite from this class when implement a specific particle type
+*/
+class FAbstractParticle{
+public:	
+	/** Default destructor */
+	virtual ~FAbstractParticle(){
+	}
+
+	/**
+	* Must be implemented by each user Particle class
+	* @return the position of the current cell
+	*/
+	virtual F3DPosition getPosition() const = 0;
+};
+
+
+#endif //FABSTRACTPARTICLE_HPP
+
+// [--LICENSE--]

Src/Components/FBasicCell.hpp

+#ifndef FBASICCELL_HPP
+#define FBASICCELL_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+#include "../Extenssions/FExtendPosition.hpp"
+#include "../Extenssions/FExtendMortonIndex.hpp"
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FBasicCell
+* Please read the license
+*
+* This class defines a basic cell used for examples. It extends
+* the mininum, only what is needed by FOctree and FFmmAlgorithm
+* to make the things working.
+* By using this extension it will implement the FAbstractCell without
+* inheriting from it.
+*/
+class FBasicCell : public FExtendPosition, public FExtendMortonIndex {
+public:
+    /** Default destructor */
+    virtual ~FBasicCell(){
+    }
+};
+
+
+#endif //FBASICCELL_HPP
+
+// [--LICENSE--]

Src/Components/FBasicKernels.hpp

+#ifndef FBASICKERNELS_HPP
+#define FBASICKERNELS_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+#include "FAbstractKernels.hpp"
+
+#include "../Utils/FTrace.hpp"
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class AbstractKernels
+* @brief
+* Please read the license
+*
+* This kernels simply shows the details of the information
+* it receives (in debug)
+*/
+template< class ParticleClass, class CellClass, int TreeHeight>
+class FBasicKernels : public FAbstractKernels<ParticleClass,CellClass,TreeHeight> {
+public:
+    /** Default destructor */
+    virtual ~FBasicKernels(){
+    }
+
+    /** When init the kernel */
+    virtual void init(){}
+
+    /** Print the number of particles */
+    virtual void P2M(CellClass* const , const FList<ParticleClass*>* const ) {
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        FTRACE( FTrace::Controller.leaveFunction(FTrace::KERNELS) );
+    }
+
+    /** Print the morton index */
+    virtual void M2M(CellClass* const FRestrict , const CellClass*const FRestrict *const FRestrict , const int ) {
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        FTRACE( FTrace::Controller.leaveFunction(FTrace::KERNELS) );
+    }
+
+    /** Print the morton index */
+    virtual void M2L(CellClass* const FRestrict , const CellClass*const FRestrict *const FRestrict , const int , const int ) {
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        FTRACE( FTrace::Controller.leaveFunction(FTrace::KERNELS) );
+    }
+
+    /** Print the morton index */
+    virtual void L2L(const CellClass* const FRestrict , CellClass* FRestrict *const FRestrict  , const int ) {
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        FTRACE( FTrace::Controller.leaveFunction(FTrace::KERNELS) );
+    }
+
+    /** Print the number of particles */
+    virtual void L2P(const CellClass* const , FList<ParticleClass*>* const ){
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        FTRACE( FTrace::Controller.leaveFunction(FTrace::KERNELS) );
+    }
+
+    /** Print the number of particles */
+    virtual void P2P(FList<ParticleClass*>* const FRestrict , const FList<ParticleClass*>* const FRestrict ,
+                     FList<ParticleClass*>* FRestrict const* FRestrict , const int ) {
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        FTRACE( FTrace::Controller.leaveFunction(FTrace::KERNELS) );
+    }
+};
+
+
+#endif //FBASICKERNELS_HPP
+
+// [--LICENSE--]

Src/Components/FBasicParticle.hpp

+#ifndef FBASICPARTICLE_HPP
+#define FBASICPARTICLE_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+#include "../Extenssions/FExtendPosition.hpp"
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FBasicParticle
+* Please read the license
+*
+* This class defines a basic particle used for examples. It extends
+* the mininum, only what is needed by FOctree and FFmmAlgorithm
+* to make the things working.
+* By using this extension it will implement the FAbstractParticle without
+* inheriting from it.
+*/
+class FBasicParticle : public FExtendPosition{
+public:
+    /** Default destructor */
+    virtual ~FBasicParticle(){
+    }
+};
+
+
+#endif //FBASICPARTICLE_HPP
+
+// [--LICENSE--]

Src/Components/FFmaParticle.hpp

+#ifndef FFmaPARTICLE_HPP
+#define FFmaPARTICLE_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+#include "FBasicParticle.hpp"
+#include "../Extenssions/FExtendPhysicalValue.hpp"
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FFmaParticle
+* Please read the license
+*
+* This class defines a particle for FMA loader.
+* As defined in FFmaLoader it needs {FBasicParticle,FExtendPhysicalValue}
+*/
+class FFmaParticle : public FBasicParticle, public FExtendPhysicalValue {
+public:
+    /** Default destructor */
+    virtual ~FFmaParticle(){
+    }
+};
+
+
+#endif //FFmaPARTICLE_HPP
+
+// [--LICENSE--]

Src/Components/FSimpleLeaf.hpp

+#ifndef FSIMPLELEAF_HPP
+#define FSIMPLELEAF_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+#include "../Containers/FList.hpp"
+#include "FAbstractLeaf.hpp"
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FSimpleLeaf
+* @brief
+* Please read the license
+* This class is used as a leaf in simple system (source AND target)
+* here there is only one list that store all particles.
+*/
+template< class ParticleClass >
+class FSimpleLeaf : public FAbstractLeaf<ParticleClass> {
+    FList<ParticleClass*> particles;
+
+public:
+    /** Default destructor */
+    virtual ~FSimpleLeaf(){
+    }
+
+    /**
+        * To add a new particle in the leaf
+        * @param particle the new particle
+        */
+    void push(ParticleClass* const particle){
+        this->particles.pushFront(particle);
+    }
+
+    /**
+        * To get all the sources in a leaf
+        * @return a pointer to the list of particles that are sources
+        */
+    FList<ParticleClass*>* getSrc() {
+        return &this->particles;
+    }
+
+    /**
+        * To get all the target in a leaf
+        * @return a pointer to the list of particles that are targets
+        */
+    FList<ParticleClass*>* getTargets() {
+        return &this->particles;
+    }
+
+};
+
+
+#endif //FSIMPLELEAF_HPP
+
+// [--LICENSE--]

Src/Components/FTestCell.hpp

+#ifndef FTESTCELL_HPP
+#define FTESTCELL_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+#include "FBasicCell.hpp"
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class FBasicCell
+* Please read the license
+*
+* This class is used in the FTestKernels, please
+* look at this class to know whit it is.
+*/
+class FTestCell : public FBasicCell  {
+    // To store data during upward and downward pass
+    long dataUp, dataDown;
+public:
+    FTestCell(): dataUp(0) , dataDown(0){
+    }
+    /** Default destructor */
+    virtual ~FTestCell(){
+    }
+    long getDataUp() const {
+        return this->dataUp;
+    }
+    void setDataUp(const long inData){
+        this->dataUp = inData;
+    }
+    long getDataDown() const {
+        return this->dataDown;
+    }
+    void setDataDown(const long inData){
+        this->dataDown = inData;
+    }
+};
+
+
+#endif //FTESTCELL_HPP
+
+// [--LICENSE--]

Src/Components/FTestKernels.hpp

+#ifndef FTESTKERNELS_HPP
+#define FTESTKERNELS_HPP
+// /!\ Please, you must read the license at the bottom of this page
+
+#include <iostream>
+
+#include "FAbstractKernels.hpp"
+#include "../Containers/FList.hpp"
+#include "../Containers/FOctree.hpp"
+
+#include "../Utils/FTrace.hpp"
+
+/**
+* @author Berenger Bramas (berenger.bramas@inria.fr)
+* @class AbstractKernels
+* @brief
+* Please read the license
+*
+* This kernels is a virtual kernels to validate that the fmm algorithm is
+* correctly done on particles.
+* It used FTestCell and FTestParticle
+*/
+template< class ParticleClass, class CellClass, int TreeHeight>
+class FTestKernels : public FAbstractKernels<ParticleClass,CellClass,TreeHeight> {
+public:
+    /** Default destructor */
+    virtual ~FTestKernels(){
+    }
+
+    // Before upward
+    void P2M(CellClass* const pole, const FList<ParticleClass*>* const particles) {
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        // the pole represents all particles under
+        pole->setDataUp(particles->getSize());
+        FTRACE( FTrace::Controller.leaveFunction(FTrace::KERNELS) );
+    }
+    // During upward
+    void M2M(CellClass* const FRestrict pole, const CellClass *const FRestrict *const FRestrict child, const int ) {
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        // A parent represents the sum of the child
+        for(int idx = 0 ; idx < 8 ; ++idx){
+            if(child[idx]){
+                pole->setDataUp(pole->getDataUp() + child[idx]->getDataUp());
+            }
+        }
+        FTRACE( FTrace::Controller.leaveFunction(FTrace::KERNELS) );
+    }
+    // Before Downward
+    void M2L(CellClass* const FRestrict pole, const CellClass*const FRestrict *const distantNeighbors, const int size, const int ) {
+        FTRACE( FTrace::Controller.enterFunction(FTrace::KERNELS, __FUNCTION__ , __FILE__ , __LINE__) );
+        // The pole is impacted by what represent other poles
+        for(int idx = 0 ; idx < size ; ++idx){
+            pole->setDataDown(pole->getDataDown() + distantNeighbors[idx]->getDataUp());
+        }