diff --git a/deepfinder/inference.py b/deepfinder/inference.py index 535d2b558d29c904337e7b925ce612b957dffdec..d8624bdcfdebccb01ed3c597c125135ca88bba62 100644 --- a/deepfinder/inference.py +++ b/deepfinder/inference.py @@ -130,7 +130,7 @@ class Segment(core.DeepFinder): dataArray = (dataArray[:] - np.mean(dataArray[:])) / np.std(dataArray[:]) # normalize dataArray = np.pad(dataArray, self.pcrop, mode='constant') # zeropad dim = dataArray.shape - #dataArray = np.reshape(dataArray, (1, dim[0], dim[1], dim[2], 1)) # reshape for keras [batch,x,y,z,channel] + dataArray = np.reshape(dataArray, (1, dim[0], dim[1], dim[2], 1)) # reshape for keras [batch,x,y,z,channel] pred = self.net.predict(dataArray, batch_size=1) predArray = pred[0, :, :, :, :]