diff --git a/deepfinder/inference.py b/deepfinder/inference.py index 9d500e38819d650e6ec1ae8ba333b386127c386c..a63bc72e4d7e0b676cfb08ba54551e2b6fa852d9 100644 --- a/deepfinder/inference.py +++ b/deepfinder/inference.py @@ -132,11 +132,11 @@ class Segment(core.DeepFinder): dataArray = (dataArray[:] - np.mean(dataArray[:])) / np.std(dataArray[:]) # normalize dataArray = np.pad(dataArray, self.pcrop, mode='constant') # zeropad dim = dataArray.shape - dataArray = np.reshape(dataArray, (1, dim[0], dim[1], dim[2], 1)) # reshape for keras [batch,x,y,z,channel] + #dataArray = np.reshape(dataArray, (1, dim[0], dim[1], dim[2], 1)) # reshape for keras [batch,x,y,z,channel] pred = self.net.predict(dataArray, batch_size=1) predArray = pred[0, :, :, :, :] - predArray = predArray[self.pcrop:-self.pcrop, self.pcrop:-self.pcrop, self.pcrop:-self.pcrop, :] # unpad + #predArray = predArray[self.pcrop:-self.pcrop, self.pcrop:-self.pcrop, self.pcrop:-self.pcrop, :] # unpad return predArray