Mentions légales du service

Skip to content
Snippets Groups Projects
Commit 12c963b4 authored by Sven Thiele's avatar Sven Thiele
Browse files

use pyasp-1.3.1

parent 3ab6d4a6
No related branches found
No related tags found
No related merge requests found
1.2.1
----------
use pyasp-1.3.1
1.2
----------
use pyasp-1.3
......
......@@ -33,7 +33,7 @@ class install(_install):
setup(cmdclass={'install': install},
name='precursor',
version='1.2',
version='1.2.1',
url='http://pypi.python.org/pypi/precursor/',
license='GPLv3+',
description='Compute minimal metabolic precursors sets that enable the production of target metabolites.',
......@@ -45,6 +45,6 @@ setup(cmdclass={'install': install},
package_data = {'__precursor__' : ['encodings/*.lp']},
scripts = ['precursor.py'],
install_requires=[
"pyasp == 1.3"
"pyasp == 1.3.1"
]
)
\ No newline at end of file
......@@ -36,7 +36,7 @@ def satcheck(net, pseeds, targets):
target_f = targets.to_file()
prg = [satcheck_prg, net_f, pseed_f, target_f ]
solver = GringoClasp()
models = solver.run(prg,nmodels=1,collapseTerms=True,collapseAtoms=False)
models = solver.run(prg,collapseTerms=True,collapseAtoms=False)
os.unlink(net_f)
os.unlink(pseed_f)
os.unlink(target_f)
......@@ -50,7 +50,7 @@ def get_card_minimal_precursor_sets(net, pseeds, targets):
prg = [card_min_precursor_prg, net_f, pseed_f, target_f ]
coptions = '--project --opt-mode=optN'
solver = GringoClasp(clasp_options=coptions)
models = solver.run(prg,nmodels=0,collapseTerms=True,collapseAtoms=False)
models = solver.run(prg,collapseTerms=True,collapseAtoms=False)
os.unlink(net_f)
os.unlink(pseed_f)
os.unlink(target_f)
......@@ -88,7 +88,7 @@ def get_automatic_pseeds(net, targets):
target_f = targets.to_file()
prg = [automatic_pseeds_prg, net_f, target_f ]
solver = GringoClasp()
models = solver.run(prg,nmodels=10,collapseTerms=True,collapseAtoms=False)
models = solver.run(prg,collapseTerms=True,collapseAtoms=False)
os.unlink(net_f)
os.unlink(target_f)
return models[0]
......@@ -99,8 +99,8 @@ def get_subset_min_precursor_sets(net, pseeds, targets):
pseed_f = pseeds.to_file('pseed.lp')
target_f = targets.to_file('targets.lp')
prg = [precursor_prg, heu_prg, net_f, pseed_f, target_f ]
solver = GringoHClasp(clasp_options='--heu=domain --enum-mode=record')
solutions = solver.run(prg,nmodels=0,collapseTerms=True,collapseAtoms=False)
solver = GringoHClasp(clasp_options='0 --heu=domain --enum-mode=record')
solutions = solver.run(prg,collapseTerms=True,collapseAtoms=False)
os.unlink(net_f)
os.unlink(pseed_f)
os.unlink(target_f)
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment