Commits · 56e194b44d530d2d4eccf2b4a28ccbb1d628db35 · VIGNET Pierre / cadbiom

12 Dec, 2018 2 commits

[lib] Remove nb_clauses() call from the solver object · 56e194b4

VIGNET Pierre authored Dec 12, 2018

=> Not supported anymore since it is a private attribute of the C++ class
This feature is only used during tests so, not very important (?)

56e194b4

[lib] Start of unit test maintenance · 9cf5b885

VIGNET Pierre authored Dec 12, 2018

- Fix temp dirs
- Fix test_frontier for model4
- Use future print_function
- Add doc when possible

9cf5b885

11 Dec, 2018 3 commits
- [library] Change of notation: cam -> mac · 31ccc1b8
  VIGNET Pierre authored Dec 11, 2018
  
  31ccc1b8
- [gui] Change of notation: cam -> mac · b2ed1573
  VIGNET Pierre authored Dec 11, 2018
  
  b2ed1573
- [command_line] Change of notation: cam -> mac · 412efe1f
  VIGNET Pierre authored Dec 11, 2018
  
  412efe1f
10 Dec, 2018 2 commits
- Fix typos · 36e94e87
  VIGNET Pierre authored Dec 10, 2018
  
  36e94e87
- Ability to map identifiers with cadbiom names · 051721e5
  VIGNET Pierre authored Dec 10, 2018
  
  051721e5
28 Nov, 2018 3 commits
- Rewrite first part of the workflow; Add real examples and files · 1986884b
  VIGNET Pierre authored Nov 28, 2018
  
  1986884b
- Fix the parsing of solution file names · bac2df36
  VIGNET Pierre authored Nov 28, 2018
  
  bac2df36
- Add occurences matrix · 6e1df6e3
  VIGNET Pierre authored Nov 28, 2018
  
  6e1df6e3
31 Oct, 2018 4 commits
- Add directive to document interactio_graph module · a8e57625
  VIGNET Pierre authored Oct 31, 2018
  
  a8e57625
- Update module documentation: list of functions · 6483abb9
  VIGNET Pierre authored Oct 31, 2018
  
  6483abb9
- Add usefull functions: get_cam_lines get_all_cams · bbc6e04a
  VIGNET Pierre authored Oct 31, 2018
  
  bbc6e04a
- Doc: Fix typos · 39972ebd
  VIGNET Pierre authored Oct 31, 2018
  
  39972ebd
30 Oct, 2018 14 commits
- Solutions: forgotten import; add example to get_query_from_filename · b2294400
  VIGNET Pierre authored Oct 30, 2018
  
  b2294400
- parse_condition: move alert about multiple valid paths in from warning to debug loglevel · 0739812b
  VIGNET Pierre authored Oct 30, 2018
```
Decrease verbosity but this alert was useful...
```
  0739812b
- Ability to name common graphs with the query of the solution file; Improve logging · aa4a16d3
  VIGNET Pierre authored Oct 30, 2018
  
  aa4a16d3
- Remove useless finally blocks => Code very bad. Scientific publication rated (R) · 0d4c02dc
  VIGNET Pierre authored Oct 30, 2018
  
  0d4c02dc
- Fix workaround in ugly Cadbiom functions: pass unit tests · df18a0a8
  VIGNET Pierre authored Oct 30, 2018
  
  df18a0a8
- Add get_query_from_filename : standardized way to get the query from a filename · b81de0e5
  VIGNET Pierre authored Oct 30, 2018
  
  b81de0e5
- Add test: bug with operator in the names of entities in conditions · ae4c920c
  VIGNET Pierre authored Oct 30, 2018
  
  ae4c920c
- Fix unit test module import · 143c5dbe
  VIGNET Pierre authored Oct 30, 2018
  
  143c5dbe
- Add missing doc build_graph · 240e5293
  VIGNET Pierre authored Oct 30, 2018
  
  240e5293
- Add missing and useful doc for parse_condition · ed3fd1e9
  VIGNET Pierre authored Oct 30, 2018
  
  ed3fd1e9
- Add doc build_graph · dca40d7d
  VIGNET Pierre authored Oct 30, 2018
  
  dca40d7d
- Fix typos · b979e550
  VIGNET Pierre authored Oct 30, 2018
  
  b979e550
- Add command line for solutions_2_common_graph command · fbedbf90
  VIGNET Pierre authored Oct 30, 2018
  
  fbedbf90
- Ability to build a merged graph for all solutions of a query · ae9f44c9
  VIGNET Pierre authored Oct 30, 2018
  
  ae9f44c9
28 Oct, 2018 12 commits
- PEP8 review · 7afe3bfb
  VIGNET Pierre authored Oct 28, 2018
  
  7afe3bfb
- Fix typos; module doc · 1d66c04c
  VIGNET Pierre authored Oct 28, 2018
  
  1d66c04c
- Support of output_dir for build_graph · 7aef0f71
  VIGNET Pierre authored Oct 28, 2018
  
  7aef0f71
- Proper assert when a molecule of interest was not found · 65e3c86b
  VIGNET Pierre authored Oct 28, 2018
  
  65e3c86b
- Logging during the opening of files · 1aef904c
  VIGNET Pierre authored Oct 28, 2018
  
  1aef904c
- Fix typos · 88ae5e36
  VIGNET Pierre authored Oct 28, 2018
  
  88ae5e36
- Add entry point json_2_interaction_graph to the command_line module · 5302b4a1
  VIGNET Pierre authored Oct 28, 2018
  
  5302b4a1
- build_graph: update doc · e5a1a074
  VIGNET Pierre authored Oct 28, 2018
  
  e5a1a074
- build_interactions: update doc; Fix typos · 3e6571b9
  VIGNET Pierre authored Oct 28, 2018
  
  3e6571b9
- Add doc build_interactions · c99a495a
  VIGNET Pierre authored Oct 28, 2018
  
  c99a495a
- Divide the memory use by 7; computation time reduced by 10 sec · eb2ded38
  VIGNET Pierre authored Oct 28, 2018
  
  eb2ded38
- interaction graph: Update doc · d24e365e
  VIGNET Pierre authored Oct 28, 2018
  
  d24e365e