Add doc build_interactions

command_line/cadbiom_cmd/interaction_graph.py

@@ -221,13 +221,38 @@ def build_interactions(filtered_macs, binary_interactions):
 
     PS: genes and stimulis are frontier places
 
-    :return:
-        all_genes: All genes in all the solutions
-        all_stimuli: All stimulis in all the solutions
-        genes_interactions: Interactions between genes in the same solution
-        stimulis_interactions: Interactions between stimuli in the same solution
-        genes_stimuli_interactions: Interactions between genes and stimulis in the same solution
-        filtered_binary_interactions: Interactions between molecules of interest and frontier places that are not genes in trajectories
+    :param filtered_macs: All solutions related to the molecules of interest.
+
+        .. code-block:: python
+
+            (("frontier_1", "frontier_2", "frontier_3"),)
+    :type filtered_macs: <tuple <tuple <str>>>
+    :param binary_interactions: A dictionary of related frontier places.
+
+        .. code-block:: python
+
+            # For molecules of interest "A" and "B"
+            {"A": {
+               "frontier_1": 1,
+               "frontier_2": 1,
+             },
+             "B": {
+               "frontier_3": 1,
+             },
+            }
+    :type binary_interactions: <dict <str>: <Counter <str>: <int>>>
+    :return: Various Counters of binary interactions:
+
+        * all_genes: All genes in all the solutions
+        * all_stimuli: All stimulis in all the solutions
+        * genes_interactions: Interactions between genes in the same solution
+        * stimulis_interactions: Interactions between stimuli in the same solution
+        * genes_stimuli_interactions: Interactions between genes and stimulis in
+          the same solution
+        * filtered_binary_interactions: Counter interactions between molecules of
+          interest and frontier places that are not genes in trajectories
+
+    :rtype: <set>, <set>, <Counter>, <Counter>, <Counter>, <Counter>
     """
 
     genes_stimuli_interactions = Counter()