Commit b6e3c782 authored by VIGNET Pierre's avatar VIGNET Pierre
Browse files

Update makefile for the new entry point

parent de7dc8e1
......@@ -19,32 +19,32 @@ run_gui:
unit_test:
@echo Unit tests...
$(CMD_PYTHON) script_mac.py -vv debug compute_macs bio_models/mini_test_publi.bcx Px --steps 10
$(CMD_PYTHON) cadbiom_cmd.py -vv debug compute_macs bio_models/mini_test_publi.bcx Px --steps 10
py.test
@# cluster unit tests
@#../.local/bin/py.test test
multiprocess:
$(CMD_PYTHON) script_mac.py -vv debug compute_macs bio_models/pid_and_clock.bcx --input_file bio_models/input.txt --steps 7 --output run
$(CMD_PYTHON) cadbiom_cmd.py -vv debug compute_macs bio_models/pid_and_clock.bcx --input_file bio_models/input.txt --steps 7 --output run
t1:
$(CMD_PYTHON) script_mac.py -vv debug compute_macs bio_models/pid_and_clock.bcx SRP9 --steps 10 --output p1
$(CMD_PYTHON) cadbiom_cmd.py -vv debug compute_macs bio_models/pid_and_clock.bcx SRP9 --steps 10 --output p1
t2:
$(CMD_PYTHON) script_mac.py -vv debug compute_macs bio_models/pid_and_clock.bcx SRP9 --steps 7 --output p2
$(CMD_PYTHON) cadbiom_cmd.py -vv debug compute_macs bio_models/pid_and_clock.bcx SRP9 --steps 7 --output p2
t3:
$(CMD_PYTHON) script_mac.py -vv debug compute_macs "bio_models/Whole NCI-PID database translated into CADBIOM formalism(and).bcx" SRP9 --all_macs --steps 10 --output p3
$(CMD_PYTHON) cadbiom_cmd.py -vv info compute_macs "bio_models/Whole NCI-PID database translated into CADBIOM formalism(and).bcx" SRP9 --all_macs --steps 10 --output bench
t3bis:
$(CMD_PYTHON) script_mac.py -vv info compute_macs "bio_models/Whole NCI-PID database translated into CADBIOM formalism(and).bcx" SRP9 --steps 10 --output p3bis
$(CMD_PYTHON) cadbiom_cmd.py -vv info compute_macs "bio_models/Whole NCI-PID database translated into CADBIOM formalism(and).bcx" SRP9 --steps 10 --output p3bis
t4:
$(CMD_PYTHON) script_mac.py -vv debug compute_macs bio_models/pid_or_clock.bcx SRP9 --steps 7 --output p4
$(CMD_PYTHON) cadbiom_cmd.py -vv debug compute_macs bio_models/pid_or_clock.bcx SRP9 --steps 7 --output p4
t5:
$(CMD_PYTHON) script_mac.py -vv debug compute_macs bio_models/pid_and_clock.bcx CCR5 --steps 10 --output p5
$(CMD_PYTHON) cadbiom_cmd.py -vv debug compute_macs bio_models/pid_and_clock.bcx CCR5 --steps 10 --output p5
t6:
$(CMD_PYTHON) script_mac.py -vv debug compute_macs bio_models/pid_and_clock.bcx CCR5 --steps 7 --output p6
$(CMD_PYTHON) cadbiom_cmd.py -vv debug compute_macs bio_models/pid_and_clock.bcx CCR5 --steps 7 --output p6
t7:
$(CMD_PYTHON) script_mac.py -vv debug compute_macs bio_models/pid_or_clock.bcx CCR5 --steps 7 --output p7
$(CMD_PYTHON) cadbiom_cmd.py -vv debug compute_macs bio_models/pid_or_clock.bcx CCR5 --steps 7 --output p7
real_study:
$(CMD_PYTHON) script_mac.py -vv info compute_macs "bio_models/Whole NCI-PID database translated into CADBIOM formalism(and).bcx" --steps 7 --all_macs --input_file bio_models/input_places.txt --combinations
$(CMD_PYTHON) cadbiom_cmd.py -vv info compute_macs "bio_models/Whole NCI-PID database translated into CADBIOM formalism(and).bcx" --steps 7 --all_macs --input_file bio_models/input_places.txt --combinations
version:
......
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