Add doc; fix typos

gui/cadbiom_gui/gt_gui/chart_checker/chart_checker_controler.py

@@ -254,6 +254,7 @@ class OccurenceForm(object):
     def on_cond(self, widget):
         """
         launch solution computations
+        If solutions are found, MAC search is unlocked.
         """
         # desactivate buttons
         self.but_solutions.set_sensitive(False)

gui/cadbiom_gui/gt_gui/chart_misc_widgets.py

@@ -39,7 +39,12 @@
 ## Contributor(s): Michel Le Borgne
 ##
 """
-Small widgets for Cadbiom gui
+Small widgets for Cadbiom gui:
+- SearchManager: List of simple nodes for searching
+- SearchFrontier: Same as SearchManager but specialized on frontier nodes
+- LegendWindow: Widget to display the legend
+- ImportPIDParam: Widget for model importing
+- ImportBioPAXParams: Widget for BioPAX model importing
 """
 import gtk
 import re
@@ -500,6 +505,7 @@ class ImportBioPAXParams(object):
     def __init__(self, chart, parent=None):
         self.charter = chart
 
+        # biopax2cadbiom detection
         try:
             from biopax2cadbiom.commons import SPARQL_PATH
         except ImportError:

gui/cadbiom_gui/gt_gui/chart_static/chart_stat_controler.py

@@ -348,7 +348,10 @@ class  DependencyGraphWindow(object):
 
 class SCCWindow(object):
     """
-    Class used for displaying frontier isolated components
+    Class used for displaying frontier isolated components.
+    This class is the matherclass for Basal Activated Genes,
+    and Informations windows linked to the current model
+    (via Static Analysis menu).
     """
     def __init__(self, l_fsol, emvc, reporter, parent=None):
         """

gui/cadbiom_gui/gt_gui/charter.py

@@ -932,6 +932,7 @@ class Charter(object):
 
         used by: STATWindow, SCCWindow, BAGWindow, LegendWindow
         """
+        #print "register"
         self.subwindows.add(window)
 
     def win_remove(self, window):
@@ -941,7 +942,7 @@ class Charter(object):
 
         used by: STATWindow, SCCWindow, BAGWindow, LegendWindow
         """
-
+        #print "remove"
         try:
             self.subwindows.remove(window)
         except KeyError:

gui/cadbiom_gui/gt_gui/graphics/drawing_style.py

@@ -514,6 +514,7 @@ class PlainDrawing(DrawingStyle):
     def visit_cstart_node(self, node):
         wid = float(self.view.draw_width)
         hei = float(self.view.draw_height)
+        # 1.1 value is a "magic" value due to the resize of start nodes
         return (self.NRADIUS/wid*1.1, self.NRADIUS/hei*1.1, self.H_SNODE/(2 * hei))
 
     def visit_ctrap_node(self, node):