yacrd tagshttps://gitlab.inria.fr/pmarijon/yacrd/-/tags2019-02-22T15:26:17+01:00https://gitlab.inria.fr/pmarijon/yacrd/-/tags/v0.5.1v0.5.1<p data-sourcepos="1:1-1:42" dir="auto">Break compatibility with previous version.</p>
<p data-sourcepos="3:1-3:19" dir="auto">Add two subcommand:</p>
<ul data-sourcepos="4:1-5:51" dir="auto">
<li data-sourcepos="4:1-4:44">chimeric: behavior of the previous version</li>
<li data-sourcepos="5:1-5:51">scrubbing: removes all unsupported read fragments</li>
</ul>2019-02-22T15:26:17+01:00Marijon Pierrehttps://gitlab.inria.fr/pmarijon/yacrd/-/tags/v0.4.1v0.4.1<p data-sourcepos="1:1-1:15" dir="auto">Bug correction:</p>
<ul data-sourcepos="3:1-5:0" dir="auto">
<li data-sourcepos="3:1-3:35">MHAP shared min-mers can be float</li>
<li data-sourcepos="4:1-5:0">correct error in help message</li>
</ul>2018-10-09T17:49:34+02:00Marijon Pierrehttps://gitlab.inria.fr/pmarijon/yacrd/-/tags/v0.4v0.4v0.4 Doduo
New Feature:
- yacrd can write report in json if flag `-j` or `--json` are set
New PostDetection operation:
- extract : write in name_extracted.{paf|mhap|fasta|fastq} Chimeric and Not_covered read
- spilt: write in name_spilt.{fasta|fastq} part of read with sufficient coverage
Bug correction:
- In PostDetection output name generation in fliterd input is `../something.other/test.fasta` output are `../something.other/test_filtred.fasta` not `._filtred./something.other/test.fasta`<p data-sourcepos="1:1-1:12" dir="auto">New Feature:</p>
<ul data-sourcepos="2:1-3:0" dir="auto">
<li data-sourcepos="2:1-3:0">yacrd can write report in json if flag <code>-j</code> or <code>--json</code> are set</li>
</ul>
<p data-sourcepos="4:1-4:28" dir="auto">New PostDetection operation:</p>
<ul data-sourcepos="5:1-7:0" dir="auto">
<li data-sourcepos="5:1-5:88">extract : write in name_extracted.{paf|mhap|fasta|fastq} Chimeric and Not_covered read</li>
<li data-sourcepos="6:1-7:0">spilt: write in name_spilt.{fasta|fastq} part of read with sufficient coverage</li>
</ul>
<p data-sourcepos="8:1-8:15" dir="auto">Bug correction:</p>
<ul data-sourcepos="9:1-9:188" dir="auto">
<li data-sourcepos="9:1-9:188">In PostDetection output name generation in fliterd input is <code>../something.other/test.fasta</code> output are <code>../something.other/test_filtred.fasta</code> not <code>._filtred./something.other/test.fasta</code>
</li>
</ul>2018-09-28T20:49:24+02:00Marijon Pierrehttps://gitlab.inria.fr/pmarijon/yacrd/-/tags/v0.3v0.3<p data-sourcepos="1:1-1:25" dir="auto">Complete rewrite in Rust.</p>
<p data-sourcepos="3:1-3:11" dir="auto">Change log:</p>
<ul data-sourcepos="5:1-7:30" dir="auto">
<li data-sourcepos="5:1-5:28">Support of compressed file</li>
<li data-sourcepos="6:1-6:17">Read from stdin</li>
<li data-sourcepos="7:1-7:30">Add unit and functional test</li>
</ul>2018-07-19T02:37:52+02:00Pierre Marijonpierre@marijon.frhttps://gitlab.inria.fr/pmarijon/yacrd/-/tags/v0.2.1v0.2.1<p data-sourcepos="1:1-1:10" dir="auto">Changelog:</p>
<ul data-sourcepos="3:1-4:20" dir="auto">
<li data-sourcepos="3:1-3:35">Solve compilation error on gcc-5</li>
<li data-sourcepos="4:1-4:20">Add version option</li>
</ul>2018-04-21T10:13:53+02:00Marijon Pierrehttps://gitlab.inria.fr/pmarijon/yacrd/-/tags/v0.2v0.2<p data-sourcepos="1:1-1:11" dir="auto">Changelog :</p>
<ul data-sourcepos="3:1-5:0" dir="auto">
<li data-sourcepos="3:1-3:44">Huge optimization Big Thanks to @Piezoid !</li>
<li data-sourcepos="4:1-5:0">Change in output format, better human readability</li>
</ul>2018-04-12T10:37:10+02:00Marijon Pierrehttps://gitlab.inria.fr/pmarijon/yacrd/-/tags/v0.1v0.1version 0.1<p data-sourcepos="1:1-1:21" dir="auto">First yacrd release !</p>
<p data-sourcepos="3:1-3:96" dir="auto">yacrd take long read mapping tools result (minimap, mhap, graphmap) and find chimeric long-read.</p>2018-04-06T13:34:45+02:00Marijon Pierre