Commits · master · MARIJON Pierre / KNOT

25 Jul, 2019 2 commits
- Update Readme.md · 95e0effb
  Rayan Chikhi authored Jul 25, 2019
  
  95e0effb
- Version v1.1 · 52771646
  MARIJON Pierre authored Jul 25, 2019
  
  52771646
09 May, 2019 1 commit
- conda_env.yml install 1.0 version · 13ad677c
  MARIJON Pierre authored May 09, 2019
  
  13ad677c
05 Apr, 2019 1 commit
- Correct error in script for html report name · 647834cd
  MARIJON Pierre authored Apr 05, 2019
  
  647834cd
03 Apr, 2019 2 commits
- Search path only graph contains reads not map in middle of contigs · 4c83bd0b
  MARIJON Pierre authored Apr 03, 2019
  
  4c83bd0b
- Add option self-lookup to run allow knot to search path between same extremity of same contig · 3e5b4e82
  MARIJON Pierre authored Apr 03, 2019
  
  3e5b4e82
29 Mar, 2019 1 commit
- Update readme to point to knot · e4459083
  MARIJON Pierre authored Mar 29, 2019
  
  e4459083
15 Mar, 2019 1 commit
- Update to yacrd 0.5.1 · d082204a
  MARIJON Pierre authored Mar 15, 2019
  
  d082204a
15 Feb, 2019 1 commit
- Update to fpa 0.4 · 21763641
  MARIJON Pierre authored Feb 15, 2019
  
  21763641
13 Feb, 2019 1 commit
- A read can be choose at extremity by two contig · 2ec94158
  MARIJON Pierre authored Feb 13, 2019
  
  2ec94158
12 Feb, 2019 1 commit
- Add AAG with just adjacency edges · 305b0142
  MARIJON Pierre authored Feb 12, 2019
  
  305b0142
08 Feb, 2019 1 commit
- Add instruction in Readme to generate html knot report · 5c6f2630
  MARIJON Pierre authored Feb 08, 2019
  
  5c6f2630
07 Feb, 2019 2 commits
- Update conda environement [de]activation instruction · 7fc484d9
  MARIJON Pierre authored Feb 07, 2019
  
  7fc484d9
- Add script for html report generation · 8a2348c8
  MARIJON Pierre authored Feb 07, 2019
  
  8a2348c8
06 Feb, 2019 3 commits
- better output · 7b84fbfa
  MARIJON Pierre authored Feb 06, 2019
  
  7b84fbfa
- Add script to classify path in AAG · 09ba42ac
  MARIJON Pierre authored Feb 06, 2019
  
  09ba42ac
- if path len is negative path len is 0 · ca8f1e05
  MARIJON Pierre authored Feb 06, 2019
  
  ca8f1e05
25 Jan, 2019 2 commits
- Remove forgeted instruction · 7e0f0515
  MARIJON Pierre authored Jan 25, 2019
  
  7e0f0515
- Correct biais in path weight computation · 063c084f
  MARIJON Pierre authored Jan 25, 2019
  
  063c084f
12 Jan, 2019 3 commits
- fixing -c and -r example command · fbf6d321
  Rayan Chikhi authored Jan 12, 2019
  
  fbf6d321
- my bad, previous commit was wrong · 10937c75
  Rayan Chikhi authored Jan 12, 2019
  
  10937c75
- fixed conda command in install instructions · da79c923
  Rayan Chikhi authored Jan 12, 2019
  
  da79c923
09 Jan, 2019 2 commits
- Update Readme.md · d1f32286
  Rayan Chikhi authored Jan 09, 2019
  
  d1f32286
- Update Readme.md · 5b5ccab8
  Rayan Chikhi authored Jan 09, 2019
  
  5b5ccab8
08 Jan, 2019 9 commits
- Improved presentation of the demo data set · 7a097515
  MARIJON Pierre authored Jan 08, 2019
  
  7a097515
- Add LICENSE · 9a30d695
  MARIJON Pierre authored Jan 08, 2019
  
  9a30d695
- Add summary · bb586e12
  MARIJON Pierre authored Jan 08, 2019
  
  bb586e12
- Update readme · 1769c4bc
  MARIJON Pierre authored Jan 08, 2019
  
  1769c4bc
- add option to choose the path search mode · b1a46e75
  MARIJON Pierre authored Jan 08, 2019
  
  b1a46e75
- snakemake can manage mutual exclusion and use '--' to separate knot and snakemake parameter · ed5b112d
  MARIJON Pierre authored Jan 08, 2019
  
  ed5b112d
- remove unrequired configuration · 3cea3672
  MARIJON Pierre authored Jan 08, 2019
  
  3cea3672
- Add option to set the contig length threshold · 3453c430
  MARIJON Pierre authored Jan 08, 2019
  
  3453c430
- Add dataset demo · 9e0b8730
  MARIJON Pierre authored Jan 08, 2019
  
  9e0b8730
13 Dec, 2018 1 commit
- Output contain all pair of read even path isn't found, good choose of read orientation · f1f14f4b
  MARIJON Pierre authored Dec 13, 2018
  
  f1f14f4b
25 Oct, 2018 1 commit
- Add module to select not assign read and read at extrimity to build SG · 23c3b22f
  MARIJON Pierre authored Oct 25, 2018
  
  23c3b22f
18 Oct, 2018 1 commit
- Support of no contigs graph by create tmp file · 440c256e
  MARIJON Pierre authored Oct 18, 2018
  
  440c256e
17 Oct, 2018 4 commits
- Update Readme.md · 3524c727
  Rayan Chikhi authored Oct 17, 2018
  
  3524c727
- Update Readme.md · 7767504c
  Rayan Chikhi authored Oct 17, 2018
  
  7767504c
- Update pipeline and readme · f5060e59
  MARIJON Pierre authored Oct 17, 2018
  
  f5060e59
- Add install file · cd5ddfff
  MARIJON Pierre authored Oct 17, 2018
  
  cd5ddfff