Commits · ed5b112dabad13a12c9c4961a92261c25dc4d3a1 · MARIJON Pierre / KNOT

08 Jan, 2019 4 commits
- snakemake can manage mutual exclusion and use '--' to separate knot and snakemake parameter · ed5b112d
  MARIJON Pierre authored Jan 08, 2019
  
  ed5b112d
- remove unrequired configuration · 3cea3672
  MARIJON Pierre authored Jan 08, 2019
  
  3cea3672
- Add option to set the contig length threshold · 3453c430
  MARIJON Pierre authored Jan 08, 2019
  
  3453c430
- Add dataset demo · 9e0b8730
  MARIJON Pierre authored Jan 08, 2019
  
  9e0b8730
13 Dec, 2018 1 commit
- Output contain all pair of read even path isn't found, good choose of read orientation · f1f14f4b
  MARIJON Pierre authored Dec 13, 2018
  
  f1f14f4b
25 Oct, 2018 1 commit
- Add module to select not assign read and read at extrimity to build SG · 23c3b22f
  MARIJON Pierre authored Oct 25, 2018
  
  23c3b22f
18 Oct, 2018 1 commit
- Support of no contigs graph by create tmp file · 440c256e
  MARIJON Pierre authored Oct 18, 2018
  
  440c256e
17 Oct, 2018 10 commits
- Update Readme.md · 3524c727
  Rayan Chikhi authored Oct 17, 2018
  
  3524c727
- Update Readme.md · 7767504c
  Rayan Chikhi authored Oct 17, 2018
  
  7767504c
- Update pipeline and readme · f5060e59
  MARIJON Pierre authored Oct 17, 2018
  
  f5060e59
- Add install file · cd5ddfff
  MARIJON Pierre authored Oct 17, 2018
  
  cd5ddfff
- Add Readme · 90d9c28b
  MARIJON Pierre authored Oct 17, 2018
  
  90d9c28b
- Better extremity choose · f08fbc27
  MARIJON Pierre authored Oct 17, 2018
```
For 'end' extremity sort by end position
A read are valid if they have predecessors and successors
```
  f08fbc27
- more expressive rule name · 9f529ffb
  MARIJON Pierre authored Oct 17, 2018
  
  9f529ffb
- You can use corrected read · d0b2fed1
  MARIJON Pierre authored Oct 17, 2018
  
  d0b2fed1
- Add threads option for minimap · 022b713a
  MARIJON Pierre authored Oct 17, 2018
  
  022b713a
- Reorganisation for an easiest clean up and code factorization · 60ae9a84
  MARIJON Pierre authored Oct 17, 2018
  
  60ae9a84
16 Oct, 2018 2 commits
- Add requirements.txt · 710739b3
  MARIJON Pierre authored Oct 16, 2018
  
  710739b3
- replace paf2gfa by fpa · 58eba4b9
  MARIJON Pierre authored Oct 16, 2018
  
  58eba4b9
14 Oct, 2018 2 commits
- We exclued pair of extremity not one extremity during search path step · 5f645d9f
  MARIJON Pierre authored Oct 14, 2018
  
  5f645d9f
- Map no chimeric read to assembly · cc07117d
  MARIJON Pierre authored Oct 14, 2018
  
  cc07117d
11 Oct, 2018 1 commit
- Basic pipeline · f1e0d1c5
  MARIJON Pierre authored Oct 11, 2018
  
  f1e0d1c5