Commit fbf6d321 authored by Rayan Chikhi's avatar Rayan Chikhi

fixing -c and -r example command

parent 10937c75
......@@ -56,7 +56,7 @@ Assume that
Then run KNOT as:
```
knot -i raw_reads.fasta -C contigs.fasta -g contigs.gfa -o {output prefix}
knot -r raw_reads.fasta -c contigs.fasta -g contigs.gfa -o {output prefix}
```
knot will run a snakemake pipeline and produce `{output prefix}_AAG.csv` see [output section](#output) for more details, and a directory `{output prefix}_knot` where intermediate file are store.
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment