Commit f5060e59 authored by MARIJON Pierre's avatar MARIJON Pierre

Update pipeline and readme

parent cd5ddfff
......@@ -50,10 +50,10 @@ source deactivate knot_env
Requirements:
- python3
- python >= 3.6
- snakemake >= 5.3
- [yacrd](https://github.com/natir/yacrd) avaible in bioconda or cargo
- [fpa](https://github.com/natir/fpa) avaible in bioconda or cargo
- [yacrd](https://github.com/natir/yacrd) avaible in bioconda or cargo >= 4.1
- [fpa](https://github.com/natir/fpa) avaible in bioconda or cargo >= 0.3
Instruction:
......
......@@ -22,12 +22,14 @@ digraph snakemake_dag {
7[label = "spliting_reads", color = "#27556C", style="rounded"];
// output
0[label = "build_AGG", color = "#5D2971", style="rounded"];
14[label = "build_AGG", color = "#5D2971", style="rounded"];
// other
4[label = "find_extremity", color = "#FFD300", style="rounded"];
8[label = "filter_contigs", color = "#FFD300", style="rounded"];
0[label = "path_search", color = "#FFD300", style="rounded"];
0 -> 14
1 -> 0
2 -> 0
3 -> 0
......
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