Commit 3cea3672 authored by MARIJON Pierre's avatar MARIJON Pierre

remove unrequired configuration

parent 3453c430
......@@ -26,7 +26,7 @@ rule spliting_reads:
yacrd = "{path}.yacrd"
shell:
config["yacrd"]["bin"]+" -i {input.mapping} -s {input.reads} -o {output.yacrd}"
"yacrd -i {input.mapping} -s {input.reads} -o {output.yacrd}"
rule overlap2overlapgraph:
input:
......
out_path: "knot_report"
minimap:
bin: "minimap2"
ovl_option: "-x ava-"
map_option: "-x map-"
yacrd:
bin: "yacrd"
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