Commit fed4f795 authored by MARIJON Pierre's avatar MARIJON Pierre

reuse rename version of canu paf

parent 3cd757ad
......@@ -77,7 +77,7 @@ rule search_path:
canu2realname = canu_bog_readname,
read2contig = canu_read2tig,
contig2color = canu_contig_on_canu_paf + '.legend.csv',
canu_paf = canu_paf_gfa_containment_internal_rename
canu_paf = canu_paf_gfa_rename
output:
result = "{prefix}_{name}_extremity_result.csv"
threads: 99
......
......@@ -37,7 +37,7 @@ rule search_path:
canu2realname = canu_bog_readname,
read2contig = canu_read2tig,
contig2color = canu_contig_on_minimap_paf + '.legend.csv',
canu_paf = canu_paf_gfa_containment_internal_rename,
canu_paf = canu_paf_gfa_rename,
minimap_paf = minimap_gfa_containment_internal
output:
result = "{prefix}_{name}_extremity_result.csv"
......
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